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Merge branch 'master' of github.com:othocaes/psdlag-agn
This commit is contained in:
commit
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data/STORM_III/lightcurves/HST1367.lc
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|
56835.4 1.0492 0.0015334
|
||||||
|
56839.3 1.0496 0.0039668
|
||||||
|
56841.4 1.0514 0.0014987
|
||||||
|
56842.2 1.0486 0.004392
|
||||||
|
56843.2 1.0442 0.0041289
|
||||||
|
56843.4 1.0488 0.0015184
|
||||||
|
56845.4 1.0415 0.0016418
|
||||||
|
56847.4 1.0284 0.0012048
|
||||||
|
56848.4 1.0219 0.00083962
|
||||||
|
56848.9 1.0252 0.0065753
|
||||||
|
56850.3 1.0311 0.0029486
|
||||||
|
56858.4 1.0166 0.0016626
|
||||||
|
56860.4 1.0135 0.0019027
|
||||||
|
56861.4 1.0197 0.0013262
|
||||||
|
56862.4 1.0128 0.0017233
|
||||||
|
56863.4 1.0119 0.0015518
|
||||||
|
56864.4 1.0245 0.0018702
|
||||||
|
56864.7 1.0165 0.0086684
|
||||||
|
56865.4 1.0165 0.0016406
|
||||||
|
56865.6 1.0161 0.0088544
|
10
inputfiles/HST1367_i_7647
Normal file
10
inputfiles/HST1367_i_7647
Normal file
@ -0,0 +1,10 @@
|
|||||||
|
2
|
||||||
|
data/STORM_III/lightcurves/HST1367.lc 0
|
||||||
|
data/STORM_III/lightcurves/i_7647.lc 0
|
||||||
|
8 0.005 0.019 0.0425 0.07 0.11 0.17 0.24 0.4 0.603
|
||||||
|
0
|
||||||
|
1 1 1 0.49 0.42 0.30 0.36 1.2 -0.60 -0.89 -0.72 2.39 -0.74 -1.5 -1 -3.1 -1.3 -2.3 -2 -1.9 -1.6 -2.6 -2 -1.3 -1.8 -2.6 -1.2 0 -2 -2.7 -1.3 0.63
|
||||||
|
0:0 0
|
||||||
|
0
|
||||||
|
0
|
||||||
|
100 50 50 mcmc.dat
|
@ -1,10 +0,0 @@
|
|||||||
2
|
|
||||||
data/calibration/lc_drive.dat 0
|
|
||||||
data/calibration/lc_1.dat 0
|
|
||||||
1 5e-3 5e-1
|
|
||||||
0
|
|
||||||
1 1 1 1
|
|
||||||
0:1 1
|
|
||||||
0
|
|
||||||
0
|
|
||||||
100 50 50 mcmc.dat
|
|
@ -1,10 +0,0 @@
|
|||||||
1
|
|
||||||
../data/calibration/lc_1.dat 0
|
|
||||||
3 1e-5 1e-4 5e-4 1e-3
|
|
||||||
1
|
|
||||||
1 1 1 1 1 1 1 1 1 1 1 1
|
|
||||||
0 1
|
|
||||||
0
|
|
||||||
0
|
|
||||||
100 50 50 mcmc.dat
|
|
||||||
|
|
@ -4,12 +4,13 @@
|
|||||||
# plot 'file' using 1:2:(sqrt($1)) with xerrorbars
|
# plot 'file' using 1:2:(sqrt($1)) with xerrorbars
|
||||||
# plot 'file' using 1:2:($1-$3):($1+$3):4:5 with xyerrorbars
|
# plot 'file' using 1:2:($1-$3):($1+$3):4:5 with xyerrorbars
|
||||||
|
|
||||||
plot 'tmp.sourcePSD' using 1:($2+2):3:4 with xyerrorbars, \
|
plot 'tmp.sourcePSD' using 1:($2):3:4 with xyerrorbars, \
|
||||||
'tmp.reprocPSD' using 1:($2+2):3:4 with xyerrorbars, \
|
'tmp.reprocPSD' using 1:($2):3:4 with xyerrorbars,
|
||||||
'tmp.ccPSD' using 1:($2+2):3:4 with xyerrorbars
|
#'tmp.ccPSD' using 1:($2):3:4 with xyerrorbars
|
||||||
#plot 'tmp.timelag' using 1:2:3:4 with xyerrorbars
|
#plot 'tmp.timelag' using 1:2:3:4 with xyerrorbars
|
||||||
set logscale x
|
set logscale x
|
||||||
set xrange [0.005:0.603]
|
set xrange [0.005:0.603]
|
||||||
|
set yrange [-5.5:0.5]
|
||||||
# set yrange [:1]
|
# set yrange [:1]
|
||||||
# (x, y, ydelta),
|
# (x, y, ydelta),
|
||||||
# (x, y, ylow, yhigh),
|
# (x, y, ylow, yhigh),
|
||||||
|
@ -8,6 +8,7 @@ plot 'tmp.timelag' using 1:2:3:4 with xyerrorbars
|
|||||||
#plot 'tmp.timelag' using 1:2:3:4 with xyerrorbars
|
#plot 'tmp.timelag' using 1:2:3:4 with xyerrorbars
|
||||||
set logscale x
|
set logscale x
|
||||||
set xrange [0.005:0.603]
|
set xrange [0.005:0.603]
|
||||||
|
set arrow from 0.005,0 to 0.603,0 nohead lt 3 lc rgb 'black'
|
||||||
# set yrange [:1]
|
# set yrange [:1]
|
||||||
# (x, y, ydelta),
|
# (x, y, ydelta),
|
||||||
# (x, y, ylow, yhigh),
|
# (x, y, ylow, yhigh),
|
||||||
|
10
pres/log
Normal file
10
pres/log
Normal file
@ -0,0 +1,10 @@
|
|||||||
|
Week 1:
|
||||||
|
|
||||||
|
Given four papers to read
|
||||||
|
Giving version 1 of the psdlag program
|
||||||
|
spent some time exploring the program
|
||||||
|
mostly read papers
|
||||||
|
|
||||||
|
|
||||||
|
Week 2:
|
||||||
|
Given calibration data in the form of light curves produced by a known transfer function
|
@ -6,7 +6,7 @@ use utf8;
|
|||||||
# outputs (stdout) a lightcurve in psdlag circa 2016 Zoghbi @ UMY input format
|
# outputs (stdout) a lightcurve in psdlag circa 2016 Zoghbi @ UMY input format
|
||||||
|
|
||||||
# smallest time interval.
|
# smallest time interval.
|
||||||
my $Δt = .01;
|
my $Δt = 0.1;
|
||||||
# normalization factor based on inspection of data
|
# normalization factor based on inspection of data
|
||||||
my $flux_norm = 1e14;
|
my $flux_norm = 1e14;
|
||||||
|
|
||||||
@ -18,8 +18,8 @@ $throw_digits = 5 - $keep_digits;
|
|||||||
# Skip first line -- shouldn't need this for a single filter
|
# Skip first line -- shouldn't need this for a single filter
|
||||||
<>;
|
<>;
|
||||||
|
|
||||||
#Start file with number of light curves (1) and Δt
|
#Start file Δt and with number of light curves (1)
|
||||||
my $linetoprint="# 1 $Δt";
|
my $linetoprint="# $Δt 1";
|
||||||
|
|
||||||
my $num_avg = 0;
|
my $num_avg = 0;
|
||||||
while (<>) {
|
while (<>) {
|
||||||
@ -33,6 +33,7 @@ while (<>) {
|
|||||||
$t𝓃 += 1;
|
$t𝓃 += 1;
|
||||||
$t𝜀 = 0;
|
$t𝜀 = 0;
|
||||||
}
|
}
|
||||||
|
if ($Δt >= 1) { $t𝜀 = 0; }
|
||||||
|
|
||||||
# Print all values for this line
|
# Print all values for this line
|
||||||
# say "$λ\t$t𝓃.$t𝜀$vals";
|
# say "$λ\t$t𝓃.$t𝜀$vals";
|
||||||
|
@ -6,9 +6,14 @@ use feature 'say';
|
|||||||
use locale;
|
use locale;
|
||||||
use Switch;
|
use Switch;
|
||||||
|
|
||||||
|
# This needs to be rewritten to plot the lightcurves instead
|
||||||
|
# of the PSD and timelags.
|
||||||
|
|
||||||
|
|
||||||
# Enables debug output.
|
# Enables debug output.
|
||||||
our $debug=0;
|
our $debug=0;
|
||||||
|
our #verbose=0;
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
# This section locate the output data of interest in a
|
# This section locate the output data of interest in a
|
||||||
|
47
src/.smhist
47
src/.smhist
@ -1,47 +0,0 @@
|
|||||||
data check.dat
|
|
||||||
read f 1
|
|
||||||
read pow 2
|
|
||||||
limits f pow
|
|
||||||
box
|
|
||||||
ptype 10 3
|
|
||||||
points f pow
|
|
||||||
quit
|
|
||||||
data check.dat
|
|
||||||
read f 1
|
|
||||||
read pow 2
|
|
||||||
limits f pow
|
|
||||||
ptype 10 3
|
|
||||||
points f pow
|
|
||||||
box
|
|
||||||
quit
|
|
||||||
data check.dat
|
|
||||||
read f 1
|
|
||||||
read pow 2
|
|
||||||
limits f pow
|
|
||||||
box
|
|
||||||
ptype 10 3
|
|
||||||
points f pow
|
|
||||||
set lgf = log10(f)
|
|
||||||
set lgf = alog10(f)
|
|
||||||
set lgf = lg(f)
|
|
||||||
erase
|
|
||||||
box
|
|
||||||
erase
|
|
||||||
limits lgf pow
|
|
||||||
points lgf pow
|
|
||||||
box
|
|
||||||
erase
|
|
||||||
limits lgf 0. 3.
|
|
||||||
box
|
|
||||||
points lgf pow
|
|
||||||
quit
|
|
||||||
data check.dat
|
|
||||||
read 1 f
|
|
||||||
read f 1
|
|
||||||
read pow 2
|
|
||||||
set lgf = lg(f)
|
|
||||||
limits lgf pow
|
|
||||||
box
|
|
||||||
ptype 10 3
|
|
||||||
points lgf pow
|
|
||||||
quit
|
|
32
src/README
32
src/README
@ -1,32 +0,0 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
To compile, modify the file makefile to so that libdir and incdir point to where
|
|
||||||
alglib library and header files are installed respectively, then run: make
|
|
||||||
|
|
||||||
|
|
||||||
FILES:
|
|
||||||
- README: this file
|
|
||||||
- makefile: a make file for compiling
|
|
||||||
- main.cpp: the main file, that process the input file, print help message if
|
|
||||||
needed and reads the light curves files. check readLC to see the light curve
|
|
||||||
format.
|
|
||||||
- mod.cpp: contains the class mod, which is a base class that uses the likelihood method. This on its own does nothing, but it is meant to be inherited by others, e.g. psd , lag , lag10
|
|
||||||
etc ... It is here where the likelihood is calculated, and maximized.
|
|
||||||
|
|
||||||
- psd.cpp: a child class of mod to calculate psds. psd10 is similar by it
|
|
||||||
calculate the log10 of psd. This is better than calculating the psd directly.
|
|
||||||
|
|
||||||
- lag.cpp: a child class of mod to calculate cross spectra and phase lags.
|
|
||||||
similar to psd. there is also lag10 that calcualte the log10 of the cross
|
|
||||||
spectrum plus phase lag.
|
|
||||||
|
|
||||||
- psdlag.cpp: a child class of mod to calculate psd and cross spec and phase
|
|
||||||
lag at the same time.
|
|
||||||
|
|
||||||
- inc: contains the header files.
|
|
||||||
|
|
||||||
- inc/mod.hpp: the header for mod.cpp. This file has the Mod class also, which
|
|
||||||
is a class that holds multiple mod's used for fitting multiple light curve
|
|
||||||
simultaneusly, each mod fits for one light curve, and the total log-likelihood
|
|
||||||
is the sum of individual likelihood (i.e. product of probabilities)
|
|
@ -1,6 +0,0 @@
|
|||||||
2.5e-5 4.681
|
|
||||||
5.5e-5 3.358
|
|
||||||
8.5e-5 2.911
|
|
||||||
1.5e-4 2.650
|
|
||||||
2.5e-4 1.864
|
|
||||||
3.5e-4 0.605
|
|
@ -1,6 +0,0 @@
|
|||||||
1.022e-01 9.694e-01
|
|
||||||
3.260e-01 9.192e-01
|
|
||||||
5.118e-01 9.776e-01
|
|
||||||
3.254e-01 9.269e-01
|
|
||||||
1.000e+00 9.659e-01
|
|
||||||
1.000e+00 9.891e-01
|
|
@ -2,10 +2,8 @@
|
|||||||
|
|
||||||
#libdir='/eos/azoghbi/soft/usr/lib'
|
#libdir='/eos/azoghbi/soft/usr/lib'
|
||||||
#incdir='/eos/azoghbi/soft/usr/include'
|
#incdir='/eos/azoghbi/soft/usr/include'
|
||||||
libdir='/home/caes/science/psdlag-agn/src'
|
libdir='/home/caes/science/psdlag-agn/src/inc'
|
||||||
incdir='/home/caes/science/psdlag-agn/src/inc'
|
incdir='/home/caes/science/psdlag-agn/src/inc'
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
psdlag:
|
psdlag:
|
||||||
g++ *cpp -o psdlag -O3 -Wall -lalglib -I${incdir} -L${libdir}
|
g++ *cpp -o psdlag -O3 -Wall -lalglib -I${incdir} -L${libdir}
|
||||||
|
@ -1,2 +0,0 @@
|
|||||||
|
|
||||||
|
|
Loading…
Reference in New Issue
Block a user