renaming files as the project develops

scripts/create_plots.sh

@@ -1,12 +1,50 @@
 #!/usr/local/bin/bash
 
+mkdir -p analyses/tables
+mkdir -p analyses/plots
+
+
 for analysis in analyses/*
 do
-    driving_name=$(basename $analysis|sed 's@[^≻]*≻\([^≻_]*\)_[^_]*@\1@')
+    # Grab and determine labels of analyses, skip if over the same band.
-    reproc_name=$(basename $analysis|sed 's@\([^≻]*\)≻[^≻_]*_[^_]*@\1@')
+    ref_band=$(basename $analysis|sed 's@[^≻]*≻\([^≻_]*\)_[^_]*@\1@')
-    # scripts/power_lag_plot.pl $analysis
+    echo_band=$(basename $analysis|sed 's@\([^≻]*\)≻[^≻_]*_[^_]*@\1@')
-    # mv tmp.sourcePSD analyses/tables/$reproc_namePSD.tab
+    if [[ $ref_band == $echo_band ]]; then continue; fi
-    echo $driving_name with $reproc_name
+
+    # Prepare files
+    echo "Plotting PSD and time lags for $echo_band, referred to ${ref_band}."
+    echoPSD_tabfile=analyses/tables/${echo_band}PSD.tab
+    refPSD_tabfile=analyses/tables/${ref_band}PSD.tab
+    PSD_plotfile=analyses/plots/${echo_band}_≻_${ref_band}_PSD.png
+    timelag_plotfile=analyses/plots/${echo_band}_≻_${ref_band}_timelag.png
+
+    # Output curves to temporary files using perl script, move tables to
+    # permanent location. This just assumes there are no conflicts.
+    scripts/power_lag_plot.pl $analysis
+    mv tmp.echoPSD $echoPSD_tabfile
+    mv tmp.refPSD $refPSD_tabfile
+    mv 
+
+    # Plot PSD and save using gnuplot
+    cat scripts/templates/psd_freq.gp|
+        sed "s@%TITLE@Power Spectrum for Lightcurves $echo_band & $ref_band@"|
+        sed "s@%SUBTITLE@as reported by Fausnaugh et. al, STORM III, 2016@"|
+        sed "s@%FILE1@$refPSD_tabfile@"|
+        sed "s@%FILE2@$echoPSD_tabfile@"|
+        sed "s@%OUTPUTFILE@$PSD_plotfile@" >
+            tmp.gp
+    gnuplot tmp.gp
+
+    # Plot time lags and save using gnuplot
+    cat scripts/templates/timelag_freq.gp|
+        sed "s@%TITLE@Time Lag for Lightcurve $echo_band relative to $ref_band@"|
+        sed "s@%SUBTITLE@as reported by Fausnaugh et. al, STORM III, 2016@"|
+        sed "s@%FILE1@$refPSD_tabfile@"|
+        sed "s@%FILE2@$echoPSD_tabfile@"|
+        sed "s@%OUTPUTFILE@$PSD_plotfile@" >
+            tmp.gp
+    gnuplot tmp.gp
 done
 
 
+

scripts/create_tables.pl

@@ -105,7 +105,7 @@ increments to designate the data being captured.
 if ($verbose) {
     say encode($charset,"");
     say encode($charset,
-        "           New Curve -- Source PSD");
+        "           New Curve -- Reference Curve PSD");
     say encode($charset,
         "──────────────────────────────────────────────────");
 }
@@ -118,8 +118,8 @@ foreach ( sort { $a <=> $b } keys %function_bin ) {
 #        $μ = abs($μ);
 #        $function_bin{$_}{"φdiff_μ"} = PI;
 #    }
-    $function_bin{$_}{"source_PSD_μ"} = $μ;
+    $function_bin{$_}{"ref_PSD_μ"} = $μ;
-    $function_bin{$_}{"source_PSD_σ"} = $σ;
+    $function_bin{$_}{"ref_PSD_σ"} = $σ;
     if ($verbose) {
         say encode($charset,
             "freq = " .
@@ -134,7 +134,7 @@ foreach ( sort { $a <=> $b } keys %function_bin ) {
 if ($verbose) {
     say encode($charset,"");
     say encode($charset,
-        "          New Curve -- Reprocessed PSD");
+        "          New Curve -- Reverberating Curve PSD");
     say encode($charset,
         "──────────────────────────────────────────────────");
 }
@@ -146,8 +146,8 @@ foreach ( sort { $a <=> $b } keys %function_bin ) {
 #        $μ = abs($μ);
 #        $function_bin{$_}{"φdiff_μ"} = PI;
 #    }
-    $function_bin{$_}{"reproc_PSD_μ"} = $μ;
+    $function_bin{$_}{"echo_PSD_μ"} = $μ;
-    $function_bin{$_}{"reproc_PSD_σ"} = $σ;
+    $function_bin{$_}{"echo_PSD_σ"} = $σ;
     if ($verbose) {
         say encode($charset,
             "freq = " .
@@ -163,7 +163,7 @@ foreach ( sort { $a <=> $b } keys %function_bin ) {
 if ($verbose) {
     say encode($charset,"");
     say encode($charset,
-        "          New Curve -- Cross Spectra PSD");
+        "          New Curve -- Cross Spectrum PSD");
     say encode($charset,
         "──────────────────────────────────────────────────");
 }
@@ -175,8 +175,8 @@ foreach ( sort { $a <=> $b } keys %function_bin ) {
 #        $μ = abs($μ);
 #        $function_bin{$_}{"φdiff_μ"} = PI;
 #    }
-    $function_bin{$_}{"cc_PSD_μ"} = $μ;
+    $function_bin{$_}{"crsspctrm_PSD_μ"} = $μ;
-    $function_bin{$_}{"cc_PSD_σ"} = $σ;
+    $function_bin{$_}{"crsspctrm_PSD_σ"} = $σ;
     if ($verbose) {
         say encode($charset,
             "freq = " .
@@ -241,33 +241,33 @@ if($debug) {
 
 close($outputfile);
 
-open($datafile,'>',"tmp.sourcePSD") or die $!;
+open($datafile,'>',"tmp.refPSD") or die $!;
 while( each %function_bin) {
     say $datafile
         $_ . " " .
-        $function_bin{$_}{"source_PSD_μ"} . " " .
+        $function_bin{$_}{"ref_PSD_μ"} . " " .
         $function_bin{$_}{"Δ"} . " " .
-        $function_bin{$_}{"source_PSD_σ"};
+        $function_bin{$_}{"ref_PSD_σ"};
 }
 close($datafile);
 
-open($datafile,'>',"tmp.reprocPSD") or die $!;
+open($datafile,'>',"tmp.echoPSD") or die $!;
 while( each %function_bin) {
     say $datafile
         $_ . " " .
-        $function_bin{$_}{"reproc_PSD_μ"} . " " .
+        $function_bin{$_}{"echo_PSD_μ"} . " " .
         $function_bin{$_}{"Δ"} . " " .
-        $function_bin{$_}{"reproc_PSD_σ"};
+        $function_bin{$_}{"echo_PSD_σ"};
 }
 close($datafile);
 
-open($datafile,'>',"tmp.ccPSD") or die $!;
+open($datafile,'>',"tmp.crsspctrmPSD") or die $!;
 while( each %function_bin) {
     say $datafile
         $_ . " " .
-        $function_bin{$_}{"cc_PSD_μ"} . " " .
+        $function_bin{$_}{"crsspctrm_PSD_μ"} . " " .
         $function_bin{$_}{"Δ"} . " " .
-        $function_bin{$_}{"cc_PSD_σ"};
+        $function_bin{$_}{"crsspctrm_PSD_σ"};
 }
 close($datafile);
 
@@ -282,4 +282,4 @@ while( each %function_bin) {
 close($datafile);
 
 
-#open($datafile,'>',"tmp.reprocPSD") or die $!;
+#open($datafile,'>',"tmp.echoPSD") or die $!;

scripts/templates/psd_freq.gp

@@ -1,11 +1,10 @@
 # This method assumes y values are in logarithm units already.
 
-set title "%TITLE"
 set terminal png
-set output "tmp.png"
+set output "%OUTPUTFILE"
 
-set title "Yo"
+set title "%TITLE\n{/*0.5 %SUBTITLE}"
-set xlabel "Temporal Frequency [1/days]"
+set xlabel "Temporal Frequency [days^{-1}]"
 set xrange [0.005:0.603]
 
 # Use this if you want to show PSD directly on a log axis
@@ -20,4 +19,4 @@ set logscale x
 set ylabel "log_{10} PSD"
 set yrange [-5.5:0.5]
 plot '%FILE1' using 1:2:3:4 with xyerrorbars, \
-'%FILE2' using 1:2:3:4 with xyerrorbars
+'%FILE2' using 1:2:3:4 with xyerrorbars

scripts/templates/timelag_freq.gp

@@ -1,5 +1,6 @@
 set terminal png
 set termoption dash
+set output "%OUTPUTFILE"
 
 
 plot 'tables/timelag_lc1.dat' using 1:2:3:4 with xyerrorbars, \