From f4475ee01ea3eb20270935a2b0b1343eef4857c1 Mon Sep 17 00:00:00 2001
From: caes <xaw5719@wmich.edu>
Date: Wed, 11 Jan 2017 01:45:37 -0500
Subject: [PATCH] added some argument files

---
 err_type        |  1 +
 run_analysis.sh | 15 ++++++++++-----
 2 files changed, 11 insertions(+), 5 deletions(-)
 create mode 100644 err_type

diff --git a/err_type b/err_type
new file mode 100644
index 0000000..cc5f76e
--- /dev/null
+++ b/err_type
@@ -0,0 +1 @@
+CM
diff --git a/run_analysis.sh b/run_analysis.sh
index feeefaa..b60cbac 100755
--- a/run_analysis.sh
+++ b/run_analysis.sh
@@ -4,18 +4,23 @@
 # the analyses. Parameters that this script should control: Δt, σ type, input
 # dataset(lightcurve directory), more?
 
-ref_band=
+ref_band=$(cat ref_band)
+ref_curve="/lightcurves/${ref_band}.lc"
+err_str=$(cat err_type)
 
 mkdir -p analyses/tables
 
 #for analysis in analyses/*
-for echo_curve in $lc_dir/*
+for echo_curve in "lightcurves/*"
 do
     # Grab and determine labels of analyses, skip if over the same band.
-    ref_band=$(basename $analysis|sed 's|\([^≺]*\)[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*}|\1|')
-    echo_band=$(basename $analysis|sed 's|[^≺]*[_ ]≺[_ ]\([^≺_ ]*\)[_ ]{[^_ ]*}|\1|')
+    echo_band=$(basename $echo_curve|sed 's|\(.*\)\.lc|\1|')
     if [[ $ref_band == $echo_band ]]; then continue; fi
-    err_str=$(basename $analysis|sed 's|[^≺]*[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*;\(σ∊[CLM][MFC]\)}|\1|')
+
+echo "Running analysis for $echo_band ≺ $ref_band"
+
+    python scripts/analyze_lightcurve.py "$ref_curve $echo_curve" >> "analyses/${ref_band}_≺_${echo_band}"
+    scripts/extract_tables.pl
 
 echo "Tabling PSD and time lags referred to ${ref_band} for $echo_band{${err_str}}."