Merge branch 'master' of github.com:othocaes/psdlag-agn

This commit is contained in:
Otho Ulrich 2016-08-08 09:02:41 -04:00
commit da74e3d1a4
98 changed files with 20244 additions and 144 deletions

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#!/usr/bin/env bash
# This script is meant to encapsulate all functions in proper order to produce
# the analyses. Parameters that this script should control: Δt, σ type, input
# dataset(lightcurve directory), more?

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UVW2 1928 56808.88933 3.4300e-14 7.7800e-16 14.8284 0.0246 -1
UVW2 1928 56809.22131 3.1900e-14 7.3700e-16 14.9071 0.0251 -1
UVW2 1928 56809.88925 3.3500e-14 7.6300e-16 14.8540 0.0247 -1
UVW2 1928 56810.22223 3.2800e-14 7.5400e-16 14.8769 0.0250 -1
UVW2 1928 56810.55520 3.2400e-14 7.3800e-16 14.8902 0.0247 -1
UVW2 1928 56810.88917 3.3000e-14 7.5200e-16 14.8703 0.0247 -1
UVW2 1928 56811.22115 3.3300e-14 7.9400e-16 14.8605 0.0259 -1
UVW2 1928 56811.75611 3.2500e-14 7.4900e-16 14.8869 0.0250 -1
UVW2 1928 56812.02309 3.3800e-14 7.8000e-16 14.8443 0.0251 -1
UVW2 1928 56812.37106 3.4900e-14 8.0200e-16 14.8095 0.0250 -1
UVW2 1928 56812.55504 3.4200e-14 7.8400e-16 14.8315 0.0249 -1
UVW2 1928 56813.22699 3.5700e-14 8.2900e-16 14.7849 0.0252 -1
UVW2 1928 56813.97393 3.4100e-14 7.6400e-16 14.8347 0.0243 -1
UVW2 1928 56814.37090 3.1600e-14 7.1500e-16 14.9174 0.0246 -1
UVW2 1928 56814.55489 3.5200e-14 8.3000e-16 14.8003 0.0256 -1
UVW2 1928 56814.62488 3.5500e-14 7.8600e-16 14.7910 0.0240 -1
UVW2 1928 56815.69680 3.5400e-14 8.1100e-16 14.7941 0.0249 -1
UVW2 1928 56815.95578 3.6700e-14 8.5000e-16 14.7549 0.0251 -1
UVW2 1928 56816.22876 3.7500e-14 8.5500e-16 14.7315 0.0248 -1
UVW2 1928 56817.62365 4.0000e-14 8.8100e-16 14.6615 0.0239 -1
UVW2 1928 56818.09061 4.0000e-14 8.4800e-16 14.6615 0.0230 -1
UVW2 1928 56818.23960 4.0400e-14 9.1600e-16 14.6507 0.0246 -1
UVW2 1928 56818.70456 4.1600e-14 9.5100e-16 14.6189 0.0248 -1
UVW2 1928 56818.95854 4.1700e-14 9.2900e-16 14.6163 0.0242 -1
UVW2 1928 56819.69548 4.0300e-14 9.1700e-16 14.6533 0.0247 -1
UVW2 1928 56820.22644 4.1900e-14 9.4200e-16 14.6111 0.0244 -1
UVW2 1928 56820.57341 3.9500e-14 9.0100e-16 14.6751 0.0248 -1
UVW2 1928 56820.63641 4.0700e-14 9.2700e-16 14.6426 0.0247 -1
UVW2 1928 56820.68841 4.1100e-14 9.3000e-16 14.6320 0.0246 -1
UVW2 1928 56821.90331 3.9500e-14 8.8400e-16 14.6751 0.0243 -1
UVW2 1928 56822.36428 3.8300e-14 8.6900e-16 14.7086 0.0246 -1
UVW2 1928 56823.15521 3.8600e-14 8.8900e-16 14.7001 0.0250 -1
UVW2 1928 56823.29420 3.5800e-14 8.0800e-16 14.7819 0.0245 -1
UVW2 1928 56824.61910 3.9100e-14 9.0000e-16 14.6862 0.0250 -1
UVW2 1928 56825.36204 3.6900e-14 8.3900e-16 14.7490 0.0247 -1
UVW2 1928 56825.55103 3.7400e-14 8.3900e-16 14.7344 0.0244 -1
UVW2 1928 56825.95700 3.6700e-14 7.6300e-16 14.7549 0.0226 -1
UVW2 1928 56826.42996 3.7000e-14 8.5000e-16 14.7461 0.0249 -1
UVW2 1928 56826.76194 3.4300e-14 7.8800e-16 14.8284 0.0249 -1
UVW2 1928 56827.03791 3.3800e-14 7.6700e-16 14.8443 0.0246 -1
UVW2 1928 56827.42889 3.3500e-14 7.7000e-16 14.8540 0.0250 -1
UVW2 1928 56827.88285 3.2600e-14 7.4400e-16 14.8836 0.0248 -1
UVW2 1928 56828.15183 3.2800e-14 7.5500e-16 14.8769 0.0250 -1
UVW2 1928 56828.42681 3.3300e-14 7.6800e-16 14.8605 0.0250 -1
UVW2 1928 56828.55380 3.3500e-14 7.0800e-16 14.8540 0.0229 -1
UVW2 1928 56829.01676 3.2500e-14 7.4900e-16 14.8869 0.0250 -1
UVW2 1928 56829.81470 3.1600e-14 7.4400e-16 14.9174 0.0256 -1
UVW2 1928 56830.15068 3.2600e-14 7.4300e-16 14.8836 0.0247 -1
UVW2 1928 56830.42066 3.2500e-14 7.4700e-16 14.8869 0.0250 -1
UVW2 1928 56832.01954 3.2200e-14 6.4900e-16 14.8970 0.0219 -1
UVW2 1928 56834.08538 3.1800e-14 6.3900e-16 14.9105 0.0218 -1
UVW2 1928 56837.21816 3.3300e-14 6.7000e-16 14.8605 0.0218 -1
UVW2 1928 56839.61198 3.3500e-14 6.8900e-16 14.8540 0.0223 -1
UVW2 1928 56840.27994 3.3200e-14 6.8900e-16 14.8638 0.0225 -1
UVW2 1928 56841.95782 3.2700e-14 6.5800e-16 14.8802 0.0218 -1
UVW2 1928 56844.27966 2.7600e-14 5.5700e-16 15.0643 0.0219 -1
UVW2 1928 56846.27853 3.1200e-14 6.2800e-16 14.9312 0.0219 -1
UVW2 1928 56847.74143 2.9800e-14 6.0800e-16 14.9811 0.0222 -1
UVW2 1928 56849.61031 2.7900e-14 5.6500e-16 15.0526 0.0220 -1
UVW2 1928 56852.07515 2.7600e-14 5.5700e-16 15.0643 0.0219 -1
UVW2 1928 56854.28602 2.6500e-14 5.4000e-16 15.1085 0.0221 -1
UVW2 1928 56854.35701 2.6000e-14 5.9400e-16 15.1292 0.0248 -1
UVW2 1928 56855.94892 2.6900e-14 5.4300e-16 15.0922 0.0219 -1
UVW2 1928 56858.08079 3.1650e-14 6.3730e-16 14.9157 0.0219 -1
UVW2 1928 56859.74670 3.0730e-14 6.1910e-16 14.9477 0.0219 -1
UVW2 1928 56862.07957 2.9540e-14 5.9240e-16 14.9906 0.0218 -1
UVW2 1928 56863.60449 2.9990e-14 6.0350e-16 14.9742 0.0218 -1
UVW2 1928 56865.60539 3.2370e-14 6.4980e-16 14.8913 0.0218 -1

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@ -0,0 +1,256 @@
UVM2 2246 56690.43405 2.5600e-14 6.4800e-16 14.8145 0.0275 -1
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V 5404 56715.89472 1.2620e-14 6.4742e-17 13.6759 0.0056 2
V 5404 56716.00845 1.2929e-14 5.0264e-17 13.6496 0.0042 7
V 5404 56716.84624 1.2957e-14 8.9603e-17 13.6473 0.0075 4
V 5404 56716.91669 1.2496e-14 5.8402e-17 13.6866 0.0051 2
V 5404 56717.90183 1.2463e-14 6.5271e-17 13.6895 0.0057 2
V 5404 56718.46525 1.2464e-14 4.6730e-17 13.6894 0.0041 1
V 5404 56722.93956 1.1669e-14 9.7179e-17 13.7610 0.0090 2
V 5404 56723.44704 1.1586e-14 4.1934e-17 13.7687 0.0039 1
V 5404 56723.87681 1.1550e-14 1.0313e-16 13.7721 0.0097 2
V 5404 56725.85614 1.1526e-14 9.3364e-17 13.7744 0.0088 6
V 5404 56727.44960 1.1572e-14 3.7123e-17 13.7700 0.0035 1
V 5404 56729.82751 1.1870e-14 1.0180e-16 13.7424 0.0093 2
V 5404 56730.87228 1.1873e-14 9.0512e-17 13.7421 0.0083 2
V 5404 56730.91885 1.1930e-14 9.5081e-17 13.7369 0.0087 6
V 5404 56731.87819 1.1849e-14 2.9290e-16 13.7443 0.0268 3
V 5404 56731.89093 1.2099e-14 1.1340e-16 13.7217 0.0102 10
V 5404 56732.49732 1.2056e-14 2.5845e-17 13.7255 0.0023 1
V 5404 56733.03934 1.1503e-14 2.5934e-16 13.7765 0.0245 3
V 5404 56733.81337 1.1726e-14 9.1736e-17 13.7557 0.0085 10
V 5404 56734.87490 1.2002e-14 9.0500e-17 13.7304 0.0082 2
V 5404 56734.93954 1.2279e-14 1.1022e-16 13.7056 0.0097 10
V 5404 56735.77574 1.2660e-14 4.8115e-17 13.6725 0.0041 2
V 5404 56735.94263 1.2559e-14 3.3219e-17 13.6812 0.0029 7
V 5404 56737.43270 1.2630e-14 1.9183e-17 13.6750 0.0016 1
V 5404 56738.44405 1.2825e-14 2.7635e-17 13.6584 0.0023 1
V 5404 56738.99077 1.3007e-14 3.6749e-17 13.6431 0.0031 4
V 5404 56739.92102 1.3332e-14 8.6062e-17 13.6163 0.0070 6
V 5404 56739.92692 1.3340e-14 3.9549e-17 13.6157 0.0032 7
V 5404 56739.95124 1.3337e-14 2.9216e-16 13.6159 0.0238 3
V 5404 56740.97243 1.3431e-14 5.8499e-17 13.6083 0.0047 4
V 5404 56741.73763 1.3660e-14 5.4316e-17 13.5899 0.0043 2
V 5404 56741.87938 1.3491e-14 8.3328e-17 13.6034 0.0067 6
V 5404 56741.91613 1.3509e-14 4.9037e-17 13.6020 0.0039 7
V 5404 56741.95456 1.3447e-14 8.0607e-17 13.6070 0.0065 4
V 5404 56742.44415 1.3660e-14 4.3412e-17 13.5899 0.0035 1
V 5404 56742.91724 1.3529e-14 6.5057e-17 13.6004 0.0052 10
V 5404 56742.99643 1.3745e-14 6.8076e-17 13.5832 0.0054 4
V 5404 56744.43787 1.3954e-14 4.2349e-17 13.5668 0.0033 1
V 5404 56744.51056 1.3805e-14 7.4291e-17 13.5785 0.0058 14
V 5404 56744.93717 1.3925e-14 5.2984e-17 13.5691 0.0041 7
V 5404 56744.99568 1.4010e-14 6.5568e-17 13.5625 0.0051 4
V 5404 56745.80353 1.4134e-14 6.5152e-17 13.5529 0.0050 2
V 5404 56745.86784 1.4079e-14 4.7798e-17 13.5571 0.0037 7
V 5404 56746.69823 1.4183e-14 8.3507e-17 13.5491 0.0064 2
V 5404 56748.46653 1.4361e-14 3.7938e-17 13.5356 0.0029 1
V 5404 56750.38294 1.4405e-14 3.4363e-17 13.5323 0.0026 1
V 5404 56752.40920 1.4113e-14 4.0726e-17 13.5545 0.0031 1
V 5404 56753.31809 1.3975e-14 2.8203e-17 13.5652 0.0022 1
V 5404 56753.49783 1.3775e-14 1.0844e-16 13.5808 0.0085 14
V 5404 56753.93723 1.3800e-14 5.2644e-17 13.5788 0.0041 7
V 5404 56753.98618 1.3695e-14 1.6217e-16 13.5871 0.0129 3
V 5404 56754.36599 1.3593e-14 3.0401e-17 13.5953 0.0024 1
V 5404 56754.98449 1.3435e-14 2.5901e-16 13.6080 0.0209 3
V 5404 56755.42016 1.3508e-14 3.3019e-17 13.6021 0.0027 1
V 5404 56755.52628 1.3526e-14 8.9639e-17 13.6006 0.0072 11
V 5404 56755.87897 1.3509e-14 8.8153e-17 13.6020 0.0071 6
V 5404 56756.72951 1.3723e-14 5.3865e-17 13.5849 0.0043 2
V 5404 56756.93335 1.3581e-14 4.8345e-17 13.5962 0.0039 7
V 5404 56756.97733 1.3783e-14 3.5785e-16 13.5802 0.0282 3
V 5404 56757.33825 1.3458e-14 1.7746e-17 13.6061 0.0014 1
V 5404 56757.43267 1.3627e-14 8.6038e-17 13.5925 0.0069 11
V 5404 56757.95782 1.3677e-14 2.0351e-16 13.5886 0.0162 3
V 5404 56758.47171 1.3423e-14 7.2538e-17 13.6089 0.0059 1
V 5404 56758.50554 1.3340e-14 5.9941e-17 13.6157 0.0049 14
V 5404 56758.88531 1.3447e-14 8.4030e-17 13.6070 0.0068 6
V 5404 56758.97678 1.3535e-14 1.0164e-16 13.5999 0.0082 4
V 5404 56759.92371 1.3569e-14 2.3958e-16 13.5972 0.0192 3
V 5404 56760.57987 1.3436e-14 9.7197e-17 13.6079 0.0079 11
V 5404 56760.93829 1.3262e-14 3.5314e-16 13.6220 0.0289 3
V 5404 56761.51975 1.3501e-14 9.0655e-17 13.6026 0.0073 11
V 5404 56762.79873 1.3461e-14 6.0227e-17 13.6059 0.0049 2
V 5404 56765.93817 1.3461e-14 3.3987e-16 13.6059 0.0274 3
V 5404 56766.37680 1.3284e-14 1.8817e-17 13.6202 0.0015 1
V 5404 56766.79603 1.3143e-14 9.2455e-17 13.6318 0.0076 10
V 5404 56766.93552 1.3743e-14 5.0313e-16 13.5833 0.0397 3
V 5404 56767.01315 1.3149e-14 8.0411e-17 13.6313 0.0066 15
V 5404 56767.87074 1.3192e-14 7.1700e-17 13.6278 0.0059 10
V 5404 56767.89266 1.3304e-14 5.2311e-17 13.6186 0.0043 7
V 5404 56767.94070 1.3150e-14 2.1638e-16 13.6312 0.0179 3
V 5404 56767.98214 1.3320e-14 5.0410e-17 13.6173 0.0041 4
V 5404 56768.33497 1.3282e-14 4.0176e-17 13.6204 0.0033 1
V 5404 56768.83934 1.3465e-14 6.0648e-17 13.6055 0.0049 10
V 5404 56768.96374 1.3596e-14 3.3962e-16 13.5950 0.0271 3
V 5404 56769.25698 1.3387e-14 4.9062e-17 13.6118 0.0040 1
V 5404 56769.86300 1.3582e-14 4.5895e-17 13.5961 0.0037 7
V 5404 56769.95002 1.3541e-14 8.5384e-17 13.5994 0.0068 4
V 5404 56770.27989 1.3525e-14 8.5955e-17 13.6007 0.0069 5
V 5404 56770.67784 1.3663e-14 6.2835e-17 13.5897 0.0050 2
V 5404 56770.94507 1.3552e-14 8.1350e-17 13.5985 0.0065 4
V 5404 56771.81506 1.3759e-14 4.7685e-17 13.5821 0.0038 7
V 5404 56772.46030 1.3663e-14 8.9764e-17 13.5897 0.0071 11
V 5404 56772.92254 1.3807e-14 1.0976e-16 13.5783 0.0086 4
V 5404 56773.24453 1.3796e-14 4.1614e-17 13.5792 0.0033 1
V 5404 56773.68983 1.3930e-14 5.8436e-17 13.5687 0.0046 2
V 5404 56774.27225 1.3847e-14 4.6729e-17 13.5752 0.0037 1
V 5404 56774.27310 1.3947e-14 9.6912e-17 13.5673 0.0075 5
V 5404 56774.65979 1.3935e-14 6.2883e-17 13.5683 0.0049 8
V 5404 56775.27574 1.3905e-14 5.4211e-17 13.5706 0.0042 1
V 5404 56775.29497 1.3945e-14 1.1670e-16 13.5675 0.0091 5
V 5404 56775.99862 1.3863e-14 1.0846e-16 13.5739 0.0085 15
V 5404 56776.25723 1.3858e-14 4.6827e-17 13.5743 0.0037 1
V 5404 56777.25371 1.3800e-14 4.5377e-17 13.5788 0.0036 1
V 5404 56777.69865 1.3743e-14 5.8751e-17 13.5833 0.0046 2
V 5404 56777.93899 1.3753e-14 7.7410e-17 13.5826 0.0061 4
V 5404 56778.25389 1.3797e-14 5.0770e-17 13.5791 0.0040 1
V 5404 56779.28349 1.3770e-14 4.7289e-17 13.5812 0.0037 1
V 5404 56779.78602 1.3711e-14 1.4531e-16 13.5859 0.0115 6
V 5404 56779.91881 1.3528e-14 2.4020e-16 13.6005 0.0193 3
V 5404 56779.92352 1.3726e-14 8.5337e-17 13.5847 0.0068 4
V 5404 56780.22741 1.3885e-14 9.7672e-17 13.5722 0.0076 5
V 5404 56780.26593 1.3756e-14 4.8822e-17 13.5823 0.0039 1
V 5404 56780.66161 1.3867e-14 5.8075e-17 13.5736 0.0045 2
V 5404 56780.79391 1.3784e-14 5.0084e-17 13.5801 0.0039 7
V 5404 56780.83500 1.3809e-14 8.6531e-17 13.5781 0.0068 6
V 5404 56780.95307 1.3817e-14 9.5931e-17 13.5775 0.0075 4
V 5404 56781.24960 1.3740e-14 4.2705e-17 13.5836 0.0034 1
V 5404 56781.69734 1.3836e-14 5.8812e-17 13.5760 0.0046 2
V 5404 56781.73245 1.3764e-14 5.5900e-17 13.5817 0.0044 8
V 5404 56781.95313 1.3693e-14 1.3448e-16 13.5873 0.0107 4
V 5404 56782.39884 1.3729e-14 5.8877e-17 13.5844 0.0047 1
V 5404 56782.70281 1.3773e-14 5.3601e-17 13.5810 0.0042 8
V 5404 56783.28230 1.3675e-14 7.8533e-17 13.5887 0.0062 5
V 5404 56783.63788 1.3724e-14 5.7689e-17 13.5848 0.0046 2
V 5404 56783.65769 1.3691e-14 5.0301e-17 13.5875 0.0040 8
V 5404 56783.88948 1.3707e-14 1.2399e-16 13.5862 0.0098 4
V 5404 56784.64367 1.3824e-14 5.4921e-17 13.5770 0.0043 8
V 5404 56784.88003 1.3779e-14 6.6715e-17 13.5805 0.0053 4
V 5404 56785.63644 1.3996e-14 6.5604e-17 13.5635 0.0051 8
V 5404 56785.87493 1.3928e-14 6.6786e-17 13.5688 0.0052 7
V 5404 56785.92903 1.3911e-14 9.3857e-17 13.5702 0.0073 4
V 5404 56786.76923 1.3852e-14 3.5248e-17 13.5748 0.0028 7
V 5404 56786.94235 1.3560e-14 6.9573e-17 13.5979 0.0056 4
V 5404 56787.26931 1.3832e-14 5.7162e-17 13.5763 0.0045 5
V 5404 56787.82769 1.3766e-14 3.2015e-17 13.5815 0.0025 7
V 5404 56787.91521 1.3724e-14 1.3669e-16 13.5848 0.0108 4
V 5404 56788.25572 1.3829e-14 6.1468e-17 13.5766 0.0048 5
V 5404 56788.66999 1.3824e-14 5.4235e-17 13.5770 0.0043 2
V 5404 56788.83197 1.3783e-14 3.0632e-17 13.5802 0.0024 7
V 5404 56789.21464 1.3636e-14 6.5610e-17 13.5918 0.0052 5
V 5404 56789.43900 1.3774e-14 8.8890e-17 13.5809 0.0070 11
V 5404 56789.69919 1.3707e-14 4.9077e-17 13.5862 0.0039 8
V 5404 56789.83302 1.3750e-14 2.6838e-16 13.5828 0.0212 3
V 5404 56789.93702 1.3681e-14 4.8667e-17 13.5883 0.0039 4
V 5404 56790.28242 1.3509e-14 4.4785e-17 13.6020 0.0036 5
V 5404 56790.35273 1.3611e-14 7.0892e-17 13.5938 0.0057 14
V 5404 56791.77294 1.3676e-14 8.2408e-17 13.5886 0.0065 6
V 5404 56791.92149 1.3482e-14 4.9296e-17 13.6042 0.0040 4
V 5404 56792.67079 1.3531e-14 5.0591e-17 13.6002 0.0041 2
V 5404 56792.92481 1.3594e-14 6.2627e-17 13.5952 0.0050 4
V 5404 56793.56782 1.3627e-14 1.5681e-16 13.5925 0.0125 13
V 5404 56793.65918 1.3738e-14 5.3303e-17 13.5837 0.0042 2
V 5404 56793.76694 1.3749e-14 4.6879e-17 13.5829 0.0037 8
V 5404 56793.85033 1.3775e-14 2.6903e-17 13.5808 0.0021 7
V 5404 56793.88441 1.3728e-14 1.8634e-16 13.5845 0.0147 3
V 5404 56794.66711 1.3723e-14 5.3666e-17 13.5849 0.0042 2
V 5404 56794.87513 1.3841e-14 2.7585e-16 13.5756 0.0216 3
V 5404 56795.31253 1.3745e-14 7.8112e-17 13.5832 0.0062 14
V 5404 56795.33440 1.3616e-14 2.7357e-17 13.5934 0.0022 1
V 5404 56795.63368 1.3674e-14 6.1207e-17 13.5888 0.0049 2
V 5404 56795.78421 1.3711e-14 3.4213e-17 13.5859 0.0027 7
V 5404 56795.88222 1.3394e-14 2.8858e-16 13.6113 0.0234 3
V 5404 56795.91773 1.3600e-14 4.2821e-17 13.5947 0.0034 4
V 5404 56796.30580 1.3610e-14 6.4659e-17 13.5939 0.0052 1
V 5404 56796.66910 1.3681e-14 6.1379e-17 13.5883 0.0049 2
V 5404 56796.90208 1.3624e-14 4.8217e-17 13.5928 0.0038 4
V 5404 56797.54744 1.3694e-14 1.6301e-16 13.5872 0.0129 13
V 5404 56797.72321 1.3790e-14 5.4420e-17 13.5796 0.0043 8
V 5404 56797.78014 1.3628e-14 8.6234e-17 13.5925 0.0069 6
V 5404 56797.80541 1.3770e-14 5.3755e-17 13.5812 0.0042 7
V 5404 56798.63960 1.3794e-14 6.3227e-17 13.5793 0.0050 2
V 5404 56798.64410 1.3794e-14 5.6267e-17 13.5793 0.0044 8
V 5404 56798.77223 1.3784e-14 9.1392e-17 13.5801 0.0072 6
V 5404 56798.79282 1.3790e-14 5.2155e-17 13.5796 0.0041 7
V 5404 56798.79355 1.3581e-14 7.3275e-17 13.5962 0.0059 10
V 5404 56799.65095 1.3753e-14 6.5277e-17 13.5826 0.0052 2
V 5404 56799.67215 1.3681e-14 5.0932e-17 13.5883 0.0040 8
V 5404 56799.68507 1.3752e-14 9.1570e-17 13.5826 0.0072 6
V 5404 56799.77192 1.3756e-14 5.0314e-17 13.5823 0.0040 7
V 5404 56799.78915 1.3703e-14 5.3244e-17 13.5865 0.0042 10
V 5404 56799.84835 1.3758e-14 2.2116e-16 13.5822 0.0175 3
V 5404 56800.24098 1.3715e-14 7.3715e-17 13.5856 0.0058 5
V 5404 56800.37819 1.3665e-14 3.3111e-17 13.5895 0.0026 1
V 5404 56800.65409 1.3722e-14 5.1900e-17 13.5850 0.0041 8
V 5404 56800.74525 1.3744e-14 8.8254e-17 13.5833 0.0070 6
V 5404 56800.86929 1.3604e-14 2.5704e-16 13.5944 0.0205 3
V 5404 56800.87271 1.3590e-14 5.7796e-17 13.5955 0.0046 10
V 5404 56800.93940 1.3792e-14 1.2511e-16 13.5795 0.0098 15
V 5404 56801.26451 1.3591e-14 8.9859e-17 13.5954 0.0072 5
V 5404 56801.42282 1.3724e-14 3.4800e-17 13.5848 0.0028 1
V 5404 56801.70601 1.3708e-14 6.7018e-17 13.5861 0.0053 2
V 5404 56801.71370 1.3674e-14 5.2076e-17 13.5888 0.0041 8
V 5404 56801.84161 1.3795e-14 4.9688e-17 13.5792 0.0039 7
V 5404 56801.95353 1.3801e-14 1.5074e-16 13.5788 0.0119 15
V 5404 56802.30494 1.3554e-14 9.3418e-17 13.5984 0.0075 5
V 5404 56802.35474 1.3722e-14 4.5033e-17 13.5850 0.0036 1
V 5404 56802.84988 1.3428e-14 2.1998e-16 13.6085 0.0178 3
V 5404 56802.88462 1.3812e-14 1.0211e-16 13.5779 0.0080 4
V 5404 56803.32685 1.3758e-14 7.3988e-17 13.5822 0.0058 5
V 5404 56803.36872 1.3674e-14 4.6999e-17 13.5888 0.0037 1
V 5404 56803.74058 1.3764e-14 5.0049e-17 13.5817 0.0039 7
V 5404 56803.84495 1.3644e-14 2.9975e-16 13.5912 0.0239 3
V 5404 56803.89132 1.3792e-14 1.2749e-16 13.5795 0.0100 4
V 5404 56804.25645 1.3611e-14 6.9258e-17 13.5938 0.0055 5
V 5404 56804.39505 1.3700e-14 2.9551e-17 13.5867 0.0023 1
V 5404 56804.77104 1.3782e-14 7.2889e-17 13.5803 0.0057 7
V 5404 56804.83829 1.3662e-14 1.9254e-16 13.5898 0.0153 3
V 5404 56805.20274 1.3772e-14 9.4701e-17 13.5811 0.0075 5
V 5404 56805.53784 1.3634e-14 1.5812e-16 13.5920 0.0126 13
V 5404 56805.79256 1.3739e-14 4.4032e-17 13.5837 0.0035 7
V 5404 56805.86049 1.3639e-14 2.9407e-16 13.5916 0.0234 3
V 5404 56806.68272 1.3728e-14 6.8290e-17 13.5845 0.0054 2
V 5404 56806.84127 1.3720e-14 3.0215e-16 13.5852 0.0239 3
V 5404 56806.87802 1.3747e-14 9.9960e-17 13.5830 0.0079 4
V 5404 56807.69170 1.3779e-14 6.8201e-17 13.5805 0.0054 2
V 5404 56807.86497 1.3631e-14 1.7940e-16 13.5922 0.0143 3
V 5404 56808.83005 1.3696e-14 2.3198e-16 13.5871 0.0184 3
V 5404 56809.65950 1.3907e-14 5.9947e-17 13.5705 0.0047 2
V 5404 56809.83977 1.3467e-14 2.8820e-16 13.6054 0.0232 3
V 5404 56810.33061 1.3789e-14 7.0161e-17 13.5797 0.0055 1
V 5404 56810.54012 1.3849e-14 1.7907e-16 13.5750 0.0140 13
V 5404 56810.64144 1.3913e-14 5.9442e-17 13.5700 0.0046 2
V 5404 56810.79568 1.3816e-14 2.0840e-16 13.5776 0.0164 3
V 5404 56811.33046 1.3809e-14 4.2115e-17 13.5781 0.0033 1
V 5404 56811.70043 1.3891e-14 6.4350e-17 13.5717 0.0050 2
V 5404 56812.65419 1.3849e-14 6.2972e-17 13.5750 0.0049 8
V 5404 56812.70955 1.3840e-14 6.3394e-17 13.5757 0.0050 2
V 5404 56812.88843 1.3829e-14 8.5367e-17 13.5766 0.0067 6
V 5404 56813.71037 1.3910e-14 5.9256e-17 13.5702 0.0046 8
V 5404 56813.73092 1.3868e-14 6.8236e-17 13.5735 0.0053 2
V 5404 56813.76487 1.3860e-14 8.3673e-17 13.5741 0.0066 6
V 5404 56814.66602 1.3928e-14 6.3221e-17 13.5688 0.0049 2
V 5404 56814.71878 1.3947e-14 8.5586e-17 13.5673 0.0067 6
V 5404 56814.76654 1.3818e-14 8.7613e-17 13.5774 0.0069 4
V 5404 56815.40007 1.4064e-14 3.9732e-17 13.5583 0.0031 1
V 5404 56815.64647 1.4091e-14 6.0221e-17 13.5562 0.0046 2
V 5404 56815.81091 1.4064e-14 8.7731e-17 13.5583 0.0068 4
V 5404 56816.67696 1.4255e-14 8.7506e-17 13.5436 0.0067 4
V 5404 56816.73004 1.4043e-14 5.4766e-17 13.5599 0.0042 2
V 5404 56817.32662 1.4303e-14 8.6781e-17 13.5400 0.0066 5
V 5404 56817.38541 1.4280e-14 3.1016e-17 13.5417 0.0024 1
V 5404 56818.29284 1.4372e-14 8.3655e-17 13.5348 0.0063 5
V 5404 56818.30927 1.4593e-14 2.7926e-17 13.5182 0.0021 1
V 5404 56818.62851 1.4522e-14 7.1968e-17 13.5235 0.0054 4
V 5404 56818.80952 1.4665e-14 9.8153e-17 13.5128 0.0073 6
V 5404 56819.26963 1.4654e-14 1.3555e-16 13.5137 0.0100 14
V 5404 56819.29232 1.4906e-14 1.0717e-16 13.4951 0.0078 5
V 5404 56819.71156 1.4803e-14 1.0064e-16 13.5027 0.0074 2
V 5404 56819.81719 1.4911e-14 7.1611e-17 13.4948 0.0052 4
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r 6175 56771.51073 1.5914e-14 2.4341e-17 13.1343 0.0017 1
r 6175 56772.49741 1.5963e-14 1.4657e-17 13.1310 0.0010 1
r 6175 56772.82574 1.5957e-14 1.2014e-16 13.1314 0.0082 5
r 6175 56773.38818 1.5844e-14 1.6860e-16 13.1391 0.0116 4
r 6175 56773.83291 1.5962e-14 1.0370e-16 13.1310 0.0071 5
r 6175 56774.76016 1.6011e-14 1.7435e-16 13.1277 0.0118 5
r 6175 56775.40551 1.5971e-14 1.5511e-16 13.1304 0.0105 4
r 6175 56775.54774 1.6173e-14 1.6340e-17 13.1168 0.0011 1
r 6175 56776.07596 1.6292e-14 1.7462e-16 13.1088 0.0116 2
r 6175 56777.52964 1.6230e-14 2.3679e-17 13.1129 0.0016 1
r 6175 56778.49671 1.6277e-14 2.5071e-17 13.1098 0.0017 1
r 6175 56779.39649 1.5975e-14 5.9869e-16 13.1301 0.0407 3
r 6175 56779.48655 1.6049e-14 1.9692e-17 13.1251 0.0013 1
r 6175 56779.85167 1.6001e-14 1.1646e-16 13.1284 0.0079 5
r 6175 56780.49401 1.6195e-14 2.5443e-17 13.1153 0.0017 1
r 6175 56780.81477 1.5992e-14 1.1237e-16 13.1290 0.0076 5
r 6175 56781.49321 1.6092e-14 2.4733e-17 13.1222 0.0017 1
r 6175 56782.44643 1.5954e-14 2.2719e-17 13.1316 0.0015 1
r 6175 56782.74049 1.5929e-14 1.2836e-16 13.1333 0.0087 5
r 6175 56783.45126 1.6069e-14 2.3223e-17 13.1238 0.0016 1
r 6175 56784.44055 1.6067e-14 2.3882e-17 13.1239 0.0016 1
r 6175 56785.47523 1.6031e-14 1.9389e-17 13.1263 0.0013 1
r 6175 56786.48211 1.6077e-14 1.8238e-17 13.1232 0.0012 1
r 6175 56787.40311 1.5971e-14 1.4984e-17 13.1304 0.0010 1
r 6175 56790.45869 1.5832e-14 1.4121e-17 13.1399 0.0010 1
r 6175 56791.43320 1.5833e-14 1.0205e-17 13.1398 0.0007 1
r 6175 56794.46302 1.5879e-14 2.3947e-17 13.1367 0.0016 1
r 6175 56795.44503 1.5825e-14 2.9154e-17 13.1404 0.0020 1
r 6175 56796.44744 1.5777e-14 3.0174e-17 13.1437 0.0021 1
r 6175 56800.44233 1.6182e-14 2.5827e-17 13.1162 0.0017 1
r 6175 56801.42684 1.5996e-14 2.1498e-17 13.1287 0.0015 1
r 6175 56803.44006 1.6003e-14 2.7713e-17 13.1282 0.0019 1
r 6175 56805.45996 1.5892e-14 2.4104e-17 13.1358 0.0016 1
r 6175 56806.43311 1.5932e-14 2.0715e-17 13.1331 0.0014 1
r 6175 56807.43492 1.5852e-14 1.6338e-17 13.1385 0.0011 1
r 6175 56808.41440 1.6037e-14 2.8909e-17 13.1259 0.0020 1
r 6175 56809.42932 1.6159e-14 2.2402e-17 13.1177 0.0015 1
r 6175 56810.43044 1.6153e-14 3.1418e-17 13.1181 0.0021 1
r 6175 56811.41922 1.6112e-14 2.9053e-17 13.1209 0.0020 1
r 6175 56813.40213 1.6100e-14 2.9761e-17 13.1217 0.0020 1
r 6175 56814.45535 1.6200e-14 2.7937e-17 13.1150 0.0019 1
r 6175 56815.40294 1.6261e-14 2.9174e-17 13.1109 0.0019 1
r 6175 56816.27423 1.6278e-14 7.3748e-17 13.1097 0.0049 4
r 6175 56816.40991 1.6279e-14 2.6668e-17 13.1097 0.0018 1
r 6175 56816.63948 1.6063e-14 9.4249e-17 13.1242 0.0064 5
r 6175 56817.40994 1.6348e-14 2.6817e-17 13.1051 0.0018 1
r 6175 56817.83435 1.6135e-14 8.7746e-17 13.1193 0.0059 5
r 6175 56818.41477 1.6427e-14 2.1216e-17 13.0998 0.0014 1
r 6175 56819.41485 1.6454e-14 2.0875e-17 13.0981 0.0014 1
r 6175 56820.48400 1.6782e-14 1.9164e-17 13.0766 0.0012 1
r 6175 56821.24253 1.7066e-14 1.0637e-16 13.0584 0.0068 4
r 6175 56822.39549 1.6807e-14 2.5122e-17 13.0750 0.0016 1
r 6175 56823.40645 1.6921e-14 3.1519e-17 13.0677 0.0020 1
r 6175 56824.40028 1.6799e-14 3.2749e-17 13.0755 0.0021 1
r 6175 56825.41423 1.6920e-14 3.1822e-17 13.0677 0.0020 1
r 6175 56826.29162 1.6503e-14 5.3443e-16 13.0948 0.0352 3
r 6175 56826.39200 1.6573e-14 3.2291e-17 13.0902 0.0021 1
r 6175 56827.39678 1.6531e-14 3.1585e-17 13.0930 0.0021 1
r 6175 56828.39911 1.6394e-14 3.2611e-17 13.1020 0.0022 1
r 6175 56829.40894 1.6280e-14 3.0643e-17 13.1096 0.0020 1
r 6175 56830.40168 1.6201e-14 3.4631e-17 13.1149 0.0023 1
r 6175 56831.39309 1.6149e-14 3.1470e-17 13.1184 0.0021 1
r 6175 56832.43594 1.6239e-14 3.3012e-17 13.1123 0.0022 1
r 6175 56833.39730 1.6098e-14 2.7225e-17 13.1218 0.0018 1
r 6175 56834.39189 1.6105e-14 2.7488e-17 13.1213 0.0019 1
r 6175 56835.39334 1.6067e-14 3.1663e-17 13.1239 0.0021 1
r 6175 56837.23411 1.6185e-14 5.3256e-16 13.1160 0.0357 3
r 6175 56839.33665 1.6228e-14 4.6269e-16 13.1131 0.0310 3
r 6175 56841.41123 1.6193e-14 2.5718e-17 13.1154 0.0017 1
r 6175 56842.24558 1.6181e-14 1.2388e-16 13.1162 0.0083 4
r 6175 56843.21577 1.6074e-14 1.1288e-16 13.1234 0.0076 4
r 6175 56843.39107 1.6195e-14 3.0966e-17 13.1153 0.0021 1
r 6175 56845.41039 1.6098e-14 2.8955e-17 13.1218 0.0020 1
r 6175 56848.85472 1.5512e-14 5.4319e-16 13.1621 0.0380 2
r 6175 56858.38762 1.5696e-14 3.2211e-17 13.1493 0.0022 1
r 6175 56860.38654 1.5604e-14 3.2847e-17 13.1557 0.0023 1
r 6175 56861.38558 1.5824e-14 2.7557e-17 13.1405 0.0019 1
r 6175 56862.38612 1.5644e-14 2.7052e-17 13.1529 0.0019 1
r 6175 56863.38454 1.5653e-14 2.8026e-17 13.1522 0.0019 1
r 6175 56864.38455 1.5683e-14 3.2917e-17 13.1502 0.0023 1
r 6175 56864.69170 1.5906e-14 1.4082e-16 13.1348 0.0096 5
r 6175 56865.38350 1.5703e-14 3.0810e-17 13.1488 0.0021 1
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R 6439 56691.57639 1.2656e-14 1.9770e-16 13.2920 0.0170 2
R 6439 56691.62732 1.2688e-14 1.9957e-17 13.2893 0.0017 1
R 6439 56692.59183 1.3017e-14 2.3046e-16 13.2615 0.0192 2
R 6439 56693.59902 1.2992e-14 2.0369e-16 13.2636 0.0170 2
R 6439 56696.59964 1.2726e-14 2.1202e-16 13.2860 0.0181 2
R 6439 56697.55904 1.3003e-14 4.2606e-17 13.2627 0.0036 1
R 6439 56698.54186 1.3226e-14 3.4718e-17 13.2442 0.0029 1
R 6439 56699.47336 1.3201e-14 2.4990e-17 13.2462 0.0021 1
R 6439 56700.50066 1.3069e-14 2.4999e-17 13.2572 0.0021 1
R 6439 56701.56241 1.3122e-14 8.1561e-17 13.2528 0.0067 1
R 6439 56702.53599 1.3244e-14 2.0330e-17 13.2427 0.0017 1
R 6439 56708.56677 1.3378e-14 1.8252e-17 13.2318 0.0015 1
R 6439 56709.54883 1.3261e-14 2.7637e-17 13.2413 0.0023 1
R 6439 56710.47730 1.3216e-14 2.5764e-17 13.2450 0.0021 1
R 6439 56710.54491 1.3145e-14 1.5827e-16 13.2509 0.0131 2
R 6439 56716.47882 1.2580e-14 3.5746e-17 13.2986 0.0031 1
R 6439 56721.47419 1.2182e-14 2.8510e-17 13.3335 0.0025 1
R 6439 56723.46431 1.1805e-14 1.8707e-17 13.3676 0.0017 1
R 6439 56725.87074 1.1738e-14 7.2591e-17 13.3738 0.0067 4
R 6439 56727.45456 1.1726e-14 2.7081e-17 13.3749 0.0025 1
R 6439 56730.92366 1.2004e-14 6.2157e-17 13.3494 0.0056 4
R 6439 56737.43777 1.2511e-14 2.8873e-17 13.3045 0.0025 1
R 6439 56737.61115 1.2281e-14 1.9671e-16 13.3247 0.0174 2
R 6439 56738.44885 1.2735e-14 1.9350e-17 13.2853 0.0016 1
R 6439 56738.58081 1.2461e-14 2.0741e-16 13.3089 0.0181 2
R 6439 56739.31059 1.2807e-14 2.4071e-17 13.2791 0.0020 1
R 6439 56739.91574 1.2798e-14 6.4744e-17 13.2799 0.0055 4
R 6439 56740.57672 1.2562e-14 2.2429e-16 13.3001 0.0194 2
R 6439 56741.52658 1.3351e-14 2.2079e-16 13.2340 0.0180 2
R 6439 56741.82441 1.3010e-14 4.1112e-17 13.2621 0.0034 4
R 6439 56742.44914 1.3194e-14 3.0607e-17 13.2468 0.0025 1
R 6439 56744.44266 1.3461e-14 2.6464e-17 13.2251 0.0021 1
R 6439 56746.43072 1.4111e-14 2.0690e-16 13.1739 0.0159 2
R 6439 56748.47166 1.3902e-14 2.1973e-17 13.1901 0.0017 1
R 6439 56748.54139 1.4042e-14 1.9608e-16 13.1792 0.0152 2
R 6439 56750.34601 1.3980e-14 3.1287e-17 13.1840 0.0024 1
R 6439 56750.60316 1.4055e-14 2.1640e-16 13.1782 0.0167 2
R 6439 56751.54047 1.3973e-14 2.7890e-16 13.1845 0.0217 2
R 6439 56752.41420 1.3878e-14 4.2333e-17 13.1919 0.0033 1
R 6439 56753.36276 1.3772e-14 3.3446e-17 13.2003 0.0026 1
R 6439 56754.37110 1.3561e-14 3.0466e-17 13.2170 0.0024 1
R 6439 56755.42524 1.3402e-14 2.2522e-17 13.2298 0.0018 1
R 6439 56755.88104 1.3350e-14 4.4227e-17 13.2341 0.0036 4
R 6439 56757.34350 1.3503e-14 2.3647e-17 13.2217 0.0019 1
R 6439 56758.43907 1.3170e-14 2.7139e-17 13.2488 0.0022 1
R 6439 56758.52717 1.3227e-14 1.9807e-16 13.2441 0.0163 2
R 6439 56758.88275 1.3163e-14 3.8922e-17 13.2494 0.0032 4
R 6439 56763.43422 1.2829e-14 1.4517e-16 13.2773 0.0123 2
R 6439 56765.51344 1.3025e-14 1.3861e-16 13.2608 0.0116 2
R 6439 56766.29307 1.3115e-14 2.7510e-17 13.2533 0.0023 1
R 6439 56774.53089 1.3661e-14 2.0310e-16 13.2091 0.0161 2
R 6439 56778.80681 1.3226e-14 4.2003e-17 13.2442 0.0034 4
R 6439 56779.78794 1.3366e-14 4.6196e-17 13.2328 0.0038 4
R 6439 56780.83251 1.3390e-14 4.0030e-17 13.2308 0.0032 4
R 6439 56784.46808 1.3433e-14 2.4146e-16 13.2273 0.0195 2
R 6439 56788.47089 1.3389e-14 1.3393e-16 13.2309 0.0109 2
R 6439 56791.77006 1.3306e-14 3.4794e-17 13.2376 0.0028 4
R 6439 56792.79587 1.3046e-14 4.2505e-17 13.2591 0.0035 4
R 6439 56795.50257 1.2926e-14 1.4580e-16 13.2691 0.0122 2
R 6439 56797.30490 1.3426e-14 9.4190e-17 13.2279 0.0076 3
R 6439 56797.47370 1.2947e-14 2.1245e-16 13.2673 0.0178 2
R 6439 56797.77789 1.3269e-14 4.1007e-17 13.2407 0.0034 4
R 6439 56798.77420 1.3371e-14 4.1468e-17 13.2324 0.0034 4
R 6439 56799.36128 1.3553e-14 2.7743e-16 13.2177 0.0222 2
R 6439 56799.68199 1.3374e-14 4.1311e-17 13.2321 0.0034 4
R 6439 56800.46101 1.3468e-14 2.5034e-16 13.2245 0.0202 2
R 6439 56800.77419 1.3392e-14 3.8458e-17 13.2306 0.0031 4
R 6439 56801.42776 1.3423e-14 2.1901e-17 13.2281 0.0018 1
R 6439 56802.35871 1.3567e-14 2.3771e-16 13.2166 0.0190 2
R 6439 56802.35967 1.3358e-14 2.9031e-17 13.2334 0.0024 1
R 6439 56802.39694 1.3327e-14 8.6631e-17 13.2359 0.0071 3
R 6439 56803.22259 1.3405e-14 9.1857e-17 13.2296 0.0074 3
R 6439 56803.34016 1.3438e-14 4.2479e-17 13.2269 0.0034 1
R 6439 56804.39995 1.3411e-14 2.6984e-17 13.2291 0.0022 1
R 6439 56804.79155 1.3373e-14 3.8581e-17 13.2322 0.0031 4
R 6439 56805.43803 1.3355e-14 2.7686e-16 13.2337 0.0225 2
R 6439 56806.41473 1.3165e-14 1.8669e-16 13.2492 0.0154 2
R 6439 56807.36620 1.3200e-14 1.6693e-16 13.2463 0.0137 2
R 6439 56808.74427 1.3216e-14 5.4774e-17 13.2450 0.0045 4
R 6439 56810.33555 1.3344e-14 4.4912e-17 13.2345 0.0037 1
R 6439 56811.33532 1.3467e-14 3.5194e-17 13.2246 0.0028 1
R 6439 56812.79921 1.3474e-14 3.9135e-17 13.2240 0.0032 4
R 6439 56813.79090 1.3489e-14 3.9439e-17 13.2228 0.0032 4
R 6439 56814.71648 1.3446e-14 4.2879e-17 13.2263 0.0035 4
R 6439 56815.40513 1.3513e-14 7.6174e-17 13.2209 0.0061 1
R 6439 56817.39027 1.3814e-14 2.6763e-17 13.1970 0.0021 1
R 6439 56817.42227 1.3508e-14 1.5537e-16 13.2213 0.0125 2
R 6439 56818.37198 1.4322e-14 1.8030e-16 13.1578 0.0137 2
R 6439 56818.80713 1.4003e-14 5.2857e-17 13.1822 0.0041 4
R 6439 56819.43218 1.3783e-14 1.4352e-16 13.1994 0.0113 2
R 6439 56820.81405 1.4233e-14 7.0262e-17 13.1645 0.0054 4
R 6439 56821.73168 1.4386e-14 6.4871e-17 13.1529 0.0049 4
R 6439 56822.31349 1.4059e-14 4.0318e-17 13.1779 0.0031 1
R 6439 56822.40325 1.4163e-14 1.6233e-16 13.1699 0.0124 2
R 6439 56823.35100 1.4074e-14 1.7815e-17 13.1767 0.0014 1
R 6439 56824.37249 1.4191e-14 1.5729e-16 13.1677 0.0120 2
R 6439 56824.37408 1.4163e-14 4.9727e-17 13.1699 0.0038 1
R 6439 56825.40733 1.4158e-14 4.6769e-17 13.1703 0.0036 1
R 6439 56825.43322 1.4293e-14 2.8460e-16 13.1600 0.0216 2
R 6439 56827.37667 1.3926e-14 2.7796e-17 13.1882 0.0022 1
R 6439 56827.77166 1.3716e-14 4.9506e-17 13.2047 0.0039 4
R 6439 56828.80116 1.3712e-14 6.0794e-17 13.2050 0.0048 4
R 6439 56829.30942 1.3782e-14 3.8435e-17 13.1995 0.0030 1
R 6439 56831.28618 1.3351e-14 4.6522e-17 13.2340 0.0038 1
R 6439 56831.46575 1.3606e-14 1.9864e-16 13.2134 0.0159 2
R 6439 56832.27962 1.3442e-14 4.4328e-17 13.2266 0.0036 1
R 6439 56832.79813 1.3560e-14 4.2153e-17 13.2171 0.0034 4
R 6439 56833.82408 1.3595e-14 4.2187e-17 13.2143 0.0034 4
R 6439 56834.32974 1.3460e-14 4.9128e-17 13.2251 0.0040 1
R 6439 56835.36363 1.3611e-14 3.0915e-17 13.2130 0.0025 1
R 6439 56836.31791 1.3521e-14 2.9733e-17 13.2202 0.0024 1
R 6439 56836.81004 1.3378e-14 7.8432e-17 13.2318 0.0064 4
R 6439 56837.31872 1.3501e-14 3.0099e-17 13.2218 0.0024 1
R 6439 56837.78895 1.3576e-14 5.0405e-17 13.2158 0.0040 4
R 6439 56838.76999 1.3577e-14 4.6788e-17 13.2158 0.0037 4
R 6439 56839.32188 1.3560e-14 2.9911e-17 13.2171 0.0024 1
R 6439 56839.75186 1.3490e-14 4.3343e-17 13.2227 0.0035 4
R 6439 56840.78037 1.3640e-14 4.6477e-17 13.2107 0.0037 4
R 6439 56841.82767 1.3634e-14 8.5268e-17 13.2112 0.0068 4
R 6439 56844.36368 1.3530e-14 3.3987e-17 13.2195 0.0027 1
R 6439 56845.28141 1.3433e-14 1.4186e-17 13.2273 0.0011 1
R 6439 56846.34110 1.3384e-14 1.8309e-17 13.2313 0.0015 1
R 6439 56846.78281 1.3473e-14 5.2071e-17 13.2241 0.0042 4
R 6439 56848.29301 1.3091e-14 1.2573e-17 13.2553 0.0010 1
R 6439 56850.29872 1.3133e-14 1.4752e-17 13.2519 0.0012 1
R 6439 56852.28364 1.2990e-14 2.5985e-17 13.2637 0.0022 1
R 6439 56853.31290 1.2927e-14 1.6604e-17 13.2690 0.0014 1
R 6439 56854.30564 1.2791e-14 1.4360e-17 13.2805 0.0012 1
R 6439 56855.76047 1.2647e-14 4.4586e-17 13.2928 0.0038 4
R 6439 56856.24426 1.2705e-14 7.9139e-17 13.2878 0.0068 3
R 6439 56856.74788 1.2803e-14 5.4792e-17 13.2795 0.0046 4
R 6439 56857.25654 1.2788e-14 2.6603e-17 13.2808 0.0023 1
R 6439 56858.29198 1.2980e-14 2.4266e-17 13.2646 0.0020 1
R 6439 56859.31826 1.3162e-14 3.6186e-17 13.2495 0.0030 1
R 6439 56861.73946 1.3241e-14 4.0494e-17 13.2430 0.0033 4
R 6439 56863.74208 1.3262e-14 3.4804e-17 13.2412 0.0028 4

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i 7647 56693.78864 9.9818e-15 1.0832e-17 13.1765 0.0012 1
i 7647 56694.76919 1.0013e-14 1.1449e-17 13.1731 0.0012 1
i 7647 56695.70858 1.0108e-14 1.0735e-17 13.1628 0.0012 1
i 7647 56696.72704 1.0136e-14 1.3874e-17 13.1598 0.0015 1
i 7647 56696.98498 1.0183e-14 3.6828e-17 13.1548 0.0039 5
i 7647 56697.75587 1.0152e-14 1.5205e-17 13.1581 0.0016 1
i 7647 56698.71651 1.0214e-14 3.5560e-17 13.1515 0.0038 1
i 7647 56699.71212 1.0193e-14 3.9285e-17 13.1537 0.0042 1
i 7647 56700.69069 1.0248e-14 5.7142e-18 13.1479 0.0006 1
i 7647 56701.56497 1.0255e-14 1.3993e-17 13.1472 0.0015 1
i 7647 56701.83187 1.0204e-14 5.7308e-17 13.1526 0.0061 5
i 7647 56702.63742 1.0327e-14 1.3770e-17 13.1396 0.0014 1
i 7647 56703.01660 1.0295e-14 5.8458e-17 13.1429 0.0062 5
i 7647 56703.88218 1.0341e-14 2.8286e-17 13.1381 0.0030 5
i 7647 56704.83926 1.0351e-14 3.3558e-17 13.1370 0.0035 5
i 7647 56705.61028 1.0381e-14 2.5162e-17 13.1339 0.0026 4
i 7647 56705.95327 1.0396e-14 3.3394e-17 13.1323 0.0035 5
i 7647 56706.98285 1.0394e-14 4.1289e-17 13.1325 0.0043 5
i 7647 56708.02508 1.0421e-14 4.9110e-17 13.1297 0.0051 5
i 7647 56709.82915 1.0268e-14 4.4325e-17 13.1458 0.0047 5
i 7647 56710.66093 1.0238e-14 2.1402e-17 13.1490 0.0023 1
i 7647 56711.01790 1.0269e-14 5.7723e-17 13.1457 0.0061 5
i 7647 56711.68518 1.0219e-14 1.0382e-17 13.1510 0.0011 1
i 7647 56711.92414 1.0224e-14 3.3551e-17 13.1504 0.0036 5
i 7647 56713.72148 1.0099e-14 3.8844e-17 13.1638 0.0042 1
i 7647 56713.92031 1.0189e-14 3.6202e-17 13.1542 0.0039 5
i 7647 56714.72560 1.0110e-14 4.7881e-18 13.1626 0.0005 1
i 7647 56715.91352 1.0075e-14 4.2615e-17 13.1664 0.0046 5
i 7647 56716.66497 1.0073e-14 1.1921e-17 13.1666 0.0013 1
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z 9157 56696.25411 9.3547e-15 8.2542e-17 12.8557 0.0096 2
z 9157 56696.72636 9.2685e-15 2.2410e-17 12.8658 0.0026 1
z 9157 56696.98562 9.3519e-15 6.6030e-17 12.8560 0.0077 5
z 9157 56697.75520 9.2937e-15 7.9993e-18 12.8628 0.0009 1
z 9157 56698.61127 9.3296e-15 1.8661e-16 12.8586 0.0217 3
z 9157 56698.71582 9.2810e-15 1.1176e-17 12.8643 0.0013 1
z 9157 56699.27618 9.3444e-15 8.4341e-17 12.8569 0.0098 2
z 9157 56699.71145 9.3387e-15 3.2265e-17 12.8576 0.0038 1
z 9157 56700.60128 9.4830e-15 5.8924e-17 12.8409 0.0067 4
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z 9157 56701.56430 9.3415e-15 2.1153e-17 12.8572 0.0025 1
z 9157 56701.60555 9.3711e-15 1.2326e-16 12.8538 0.0143 4
z 9157 56701.83475 9.3332e-15 5.2709e-17 12.8582 0.0061 5
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z 9157 56703.88342 9.4014e-15 4.2069e-17 12.8503 0.0049 5
z 9157 56704.84045 9.4314e-15 5.2537e-17 12.8468 0.0060 5
z 9157 56705.61145 9.4912e-15 5.9547e-17 12.8400 0.0068 4
z 9157 56705.95446 9.4135e-15 5.4783e-17 12.8489 0.0063 5
z 9157 56706.98401 9.5181e-15 5.8115e-17 12.8369 0.0066 5
z 9157 56708.02631 9.4026e-15 7.7870e-17 12.8502 0.0090 5
z 9157 56709.83031 9.3931e-15 7.4527e-17 12.8513 0.0086 5
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z 9157 56711.01908 9.4054e-15 8.4577e-17 12.8498 0.0098 5
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z 9157 56711.92532 9.3897e-15 4.5735e-17 12.8517 0.0053 5
z 9157 56713.26886 9.2114e-15 8.2319e-17 12.8725 0.0097 2
z 9157 56713.72080 9.2876e-15 8.8797e-18 12.8635 0.0010 1
z 9157 56713.92148 9.2620e-15 4.9330e-17 12.8665 0.0058 5
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z 9157 56715.28224 9.2284e-15 1.3389e-16 12.8705 0.0158 2
z 9157 56715.91469 9.3218e-15 5.9838e-17 12.8595 0.0070 5
z 9157 56716.64347 9.1745e-15 8.7617e-17 12.8768 0.0104 4
z 9157 56716.66560 9.2189e-15 1.0620e-17 12.8716 0.0013 1
z 9157 56717.73427 9.1761e-15 1.0295e-17 12.8766 0.0012 1
z 9157 56717.95799 9.1675e-15 9.4107e-17 12.8777 0.0111 5
z 9157 56718.56656 9.0982e-15 9.7522e-17 12.8859 0.0116 4
z 9157 56718.67168 9.1318e-15 1.0625e-17 12.8819 0.0013 1
z 9157 56719.60622 8.8319e-15 5.9595e-16 12.9182 0.0733 3
z 9157 56720.69328 9.0444e-15 1.1842e-17 12.8923 0.0014 1
z 9157 56721.71496 8.9802e-15 1.0162e-17 12.9001 0.0012 1
z 9157 56722.73892 8.9121e-15 1.1464e-17 12.9083 0.0014 1
z 9157 56723.57238 8.8897e-15 1.1197e-17 12.9111 0.0014 1
z 9157 56726.17377 8.8643e-15 8.6172e-17 12.9142 0.0106 2
z 9157 56727.15317 8.8556e-15 1.0663e-16 12.9152 0.0131 2
z 9157 56727.61622 8.7806e-15 9.6178e-17 12.9245 0.0119 4
z 9157 56728.57721 8.9119e-15 1.0010e-17 12.9084 0.0012 1
z 9157 56729.49614 8.8292e-15 9.4379e-18 12.9185 0.0012 1
z 9157 56730.53906 8.8198e-15 9.3497e-18 12.9196 0.0012 1
z 9157 56730.83303 8.7772e-15 8.0025e-17 12.9249 0.0099 5
z 9157 56732.49544 8.9109e-15 1.0713e-17 12.9085 0.0013 1
z 9157 56733.48574 8.9315e-15 1.0281e-17 12.9060 0.0012 1
z 9157 56733.80348 8.8256e-15 6.9804e-17 12.9189 0.0086 5
z 9157 56734.48114 8.8854e-15 9.5568e-18 12.9116 0.0012 1
z 9157 56735.49921 8.9542e-15 9.9082e-18 12.9032 0.0012 1
z 9157 56735.86208 9.0394e-15 1.0869e-16 12.8929 0.0131 5
z 9157 56736.50541 8.9966e-15 9.9182e-18 12.8981 0.0012 1
z 9157 56736.77470 9.0315e-15 7.5066e-17 12.8939 0.0090 5
z 9157 56737.49025 9.0435e-15 9.7654e-18 12.8924 0.0012 1
z 9157 56740.61839 9.2149e-15 1.0833e-17 12.8721 0.0013 1
z 9157 56740.86453 9.3118e-15 1.0863e-16 12.8607 0.0127 5
z 9157 56741.61260 9.2427e-15 1.0812e-17 12.8688 0.0013 1
z 9157 56741.71889 9.3448e-15 9.1251e-17 12.8569 0.0106 5
z 9157 56743.59684 9.4699e-15 1.2479e-17 12.8424 0.0014 1
z 9157 56744.53920 9.5105e-15 1.2477e-17 12.8378 0.0014 1
z 9157 56744.70091 9.5164e-15 8.1884e-17 12.8371 0.0093 5
z 9157 56746.81946 9.5486e-15 5.5940e-17 12.8334 0.0064 5
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z 9157 56749.75678 9.6225e-15 5.5027e-17 12.8251 0.0062 5
z 9157 56751.98521 9.5725e-15 6.2168e-17 12.8307 0.0071 5
z 9157 56752.58298 9.7096e-15 1.4163e-17 12.8153 0.0016 1
z 9157 56753.57796 9.6788e-15 1.4138e-17 12.8187 0.0016 1
z 9157 56754.55564 9.5786e-15 1.4960e-17 12.8300 0.0017 1
z 9157 56755.56524 9.5203e-15 1.0734e-17 12.8367 0.0012 1
z 9157 56755.98052 9.4737e-15 1.0428e-16 12.8420 0.0120 5
z 9157 56756.51256 9.5404e-15 1.0893e-17 12.8344 0.0012 1
z 9157 56758.74938 9.4571e-15 7.2118e-17 12.8439 0.0083 5
z 9157 56759.88906 9.4253e-15 4.0218e-17 12.8475 0.0046 5
z 9157 56762.78827 9.3001e-15 4.7008e-17 12.8621 0.0055 5
z 9157 56763.75624 9.2523e-15 4.8843e-17 12.8677 0.0057 5
z 9157 56764.53775 9.4457e-15 8.2901e-17 12.8452 0.0095 4
z 9157 56764.78939 9.3346e-15 5.4751e-17 12.8580 0.0064 5
z 9157 56765.53431 9.2924e-15 8.6284e-17 12.8630 0.0101 4
z 9157 56765.58342 9.2960e-15 1.0925e-17 12.8625 0.0013 1
z 9157 56765.87186 9.3744e-15 7.5983e-17 12.8534 0.0088 5
z 9157 56768.07400 9.1989e-15 7.8078e-17 12.8739 0.0092 2
z 9157 56770.52737 9.4039e-15 1.3889e-17 12.8500 0.0016 1
z 9157 56770.78470 9.3796e-15 5.4887e-17 12.8528 0.0064 5
z 9157 56771.17647 9.4294e-15 1.2459e-16 12.8471 0.0143 2
z 9157 56771.51200 9.3576e-15 1.4185e-17 12.8554 0.0016 1
z 9157 56772.16729 9.4459e-15 1.0315e-16 12.8452 0.0119 2
z 9157 56772.49866 9.3926e-15 1.1692e-17 12.8513 0.0014 1
z 9157 56772.82913 9.4191e-15 7.2979e-17 12.8483 0.0084 5
z 9157 56773.39155 9.4190e-15 9.9593e-17 12.8483 0.0115 4
z 9157 56773.86028 9.4308e-15 7.3039e-17 12.8469 0.0084 5
z 9157 56774.76257 9.4423e-15 1.1570e-16 12.8456 0.0133 5
z 9157 56775.40886 9.4651e-15 9.5025e-17 12.8430 0.0109 4
z 9157 56775.54899 9.5143e-15 1.0393e-17 12.8373 0.0012 1
z 9157 56777.53091 9.4941e-15 1.2739e-17 12.8397 0.0015 1
z 9157 56778.49798 9.4573e-15 1.3876e-17 12.8439 0.0016 1
z 9157 56779.39565 9.4133e-15 2.0644e-16 12.8489 0.0238 3
z 9157 56779.48781 9.4793e-15 1.3195e-17 12.8413 0.0015 1
z 9157 56779.85195 9.4202e-15 6.2056e-17 12.8481 0.0072 5
z 9157 56780.49527 9.4598e-15 1.2671e-17 12.8436 0.0015 1
z 9157 56780.81386 9.4527e-15 6.4972e-17 12.8444 0.0075 5
z 9157 56781.49447 9.4549e-15 1.3640e-17 12.8441 0.0016 1
z 9157 56782.44769 9.3323e-15 1.2145e-17 12.8583 0.0014 1
z 9157 56782.73968 9.4342e-15 8.0120e-17 12.8465 0.0092 5
z 9157 56783.45253 9.4113e-15 1.2489e-17 12.8492 0.0014 1
z 9157 56784.44181 9.3849e-15 1.4474e-17 12.8522 0.0017 1
z 9157 56785.47648 9.4683e-15 1.0173e-17 12.8426 0.0012 1
z 9157 56786.48337 9.3995e-15 9.6365e-18 12.8505 0.0011 1
z 9157 56787.40437 9.3210e-15 1.1008e-17 12.8596 0.0013 1
z 9157 56790.45996 9.3759e-15 9.4167e-18 12.8533 0.0011 1
z 9157 56792.40349 9.4213e-15 1.1596e-17 12.8480 0.0013 1
z 9157 56793.46594 9.3843e-15 1.1304e-17 12.8523 0.0013 1
z 9157 56794.46428 9.3416e-15 1.3987e-17 12.8572 0.0016 1
z 9157 56795.44630 9.3589e-15 1.2746e-17 12.8552 0.0015 1
z 9157 56796.44870 9.3882e-15 1.4749e-17 12.8518 0.0017 1
z 9157 56797.45139 9.3740e-15 1.4896e-17 12.8535 0.0017 1
z 9157 56798.44430 9.4144e-15 1.5629e-17 12.8488 0.0018 1
z 9157 56799.44121 9.4507e-15 1.3971e-17 12.8446 0.0016 1
z 9157 56800.44360 9.4239e-15 1.2396e-17 12.8477 0.0014 1
z 9157 56801.42812 9.4086e-15 1.2398e-17 12.8495 0.0014 1
z 9157 56802.43765 9.4191e-15 1.0651e-17 12.8483 0.0012 1
z 9157 56803.44162 9.3911e-15 1.3572e-17 12.8515 0.0016 1
z 9157 56805.46152 9.3790e-15 1.3814e-17 12.8529 0.0016 1
z 9157 56806.43467 9.3465e-15 1.5162e-17 12.8567 0.0018 1
z 9157 56807.43648 9.3667e-15 1.3304e-17 12.8543 0.0015 1
z 9157 56808.41596 9.4057e-15 1.2888e-17 12.8498 0.0015 1
z 9157 56809.43087 9.3919e-15 1.3445e-17 12.8514 0.0016 1
z 9157 56810.43219 9.3999e-15 1.4715e-17 12.8505 0.0017 1
z 9157 56811.42096 9.4570e-15 1.3701e-17 12.8439 0.0016 1
z 9157 56812.43093 9.4513e-15 1.3596e-17 12.8446 0.0016 1
z 9157 56813.40385 9.3901e-15 1.6499e-17 12.8516 0.0019 1
z 9157 56814.45707 9.4019e-15 1.3535e-17 12.8502 0.0016 1
z 9157 56815.40467 9.4604e-15 1.6489e-17 12.8435 0.0019 1
z 9157 56816.28071 9.5324e-15 8.8622e-17 12.8353 0.0101 4
z 9157 56816.41164 9.4812e-15 1.4709e-17 12.8411 0.0017 1
z 9157 56816.64794 9.4722e-15 7.0849e-17 12.8422 0.0081 5
z 9157 56817.41166 9.4202e-15 1.6533e-17 12.8481 0.0019 1
z 9157 56817.84230 9.5380e-15 5.8725e-17 12.8346 0.0067 5
z 9157 56818.41649 9.5529e-15 1.4300e-17 12.8329 0.0016 1
z 9157 56819.28041 9.5522e-15 5.7349e-17 12.8330 0.0065 4
z 9157 56819.41658 9.5899e-15 1.3110e-17 12.8288 0.0015 1
z 9157 56820.48573 9.6675e-15 1.3287e-17 12.8200 0.0015 1
z 9157 56821.25057 9.6470e-15 6.5794e-17 12.8223 0.0074 4
z 9157 56822.39721 9.6840e-15 1.4717e-17 12.8182 0.0017 1
z 9157 56823.40819 9.7620e-15 1.6835e-17 12.8094 0.0019 1
z 9157 56824.40202 9.7451e-15 1.6661e-17 12.8113 0.0019 1
z 9157 56825.31354 9.6372e-15 9.1574e-17 12.8234 0.0103 4
z 9157 56825.41596 9.7583e-15 1.5407e-17 12.8099 0.0017 1
z 9157 56826.29969 9.6842e-15 2.0209e-16 12.8181 0.0227 3
z 9157 56826.39374 9.6636e-15 1.6682e-17 12.8204 0.0019 1
z 9157 56827.39851 9.6331e-15 1.7620e-17 12.8239 0.0020 1
z 9157 56828.40084 9.6249e-15 1.5249e-17 12.8248 0.0017 1
z 9157 56829.41066 9.5880e-15 1.3580e-17 12.8290 0.0015 1
z 9157 56830.40342 9.5620e-15 1.4686e-17 12.8319 0.0017 1
z 9157 56831.39483 9.4967e-15 1.5451e-17 12.8394 0.0018 1
z 9157 56832.43768 9.4770e-15 1.4540e-17 12.8416 0.0017 1
z 9157 56833.39903 9.5207e-15 1.3537e-17 12.8366 0.0015 1
z 9157 56835.39508 9.4231e-15 1.5401e-17 12.8478 0.0018 1
z 9157 56837.24062 9.4664e-15 2.3788e-16 12.8428 0.0273 3
z 9157 56837.76067 9.4491e-15 8.6448e-17 12.8448 0.0099 5
z 9157 56839.34463 9.5025e-15 1.4174e-16 12.8387 0.0162 3
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z 9157 56842.25356 9.5093e-15 9.5213e-17 12.8379 0.0109 4
z 9157 56843.22377 9.4775e-15 8.5410e-17 12.8416 0.0098 4
z 9157 56843.39280 9.5532e-15 1.5505e-17 12.8329 0.0018 1
z 9157 56845.41212 9.4557e-15 1.6230e-17 12.8441 0.0019 1
z 9157 56848.39233 9.4180e-15 1.5090e-17 12.8484 0.0017 1
z 9157 56850.26382 9.3490e-15 1.9399e-16 12.8564 0.0225 3
z 9157 56858.38934 9.2652e-15 1.6419e-17 12.8662 0.0019 1
z 9157 56860.38827 9.3598e-15 1.8796e-17 12.8551 0.0022 1
z 9157 56861.38730 9.3412e-15 1.4486e-17 12.8573 0.0017 1
z 9157 56862.38784 9.3544e-15 1.8848e-17 12.8557 0.0022 1
z 9157 56863.38626 9.3719e-15 1.7521e-17 12.8537 0.0020 1
z 9157 56864.38627 9.2316e-15 1.7688e-17 12.8701 0.0021 1
z 9157 56864.69970 9.2761e-15 9.0122e-17 12.8649 0.0105 5
z 9157 56865.38523 9.3475e-15 1.6411e-17 12.8565 0.0019 1
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View File

@ -0,0 +1,14 @@
for line in $(readline)
do
echo \
fd=3
while IFS='' read -u $fd -r line || [[ -n "$line" ]]; do
echo "Text read from file: $line"
done $fd< "$1"

View File

@ -0,0 +1,201 @@
# 1 2
0.00000 11.8346 0.0916311 11.8520 0.0920392
1.00000 11.5171 0.0936466 11.6313 0.0921003
2.00000 11.6853 0.0926701 11.6957 0.0921849
3.00000 11.3192 0.0939709 11.9643 0.0922556
4.00000 10.9107 0.0955774 11.7650 0.0923200
5.00000 10.9479 0.0963704 11.6677 0.0924218
6.00000 10.3560 0.0974515 11.6919 0.0925855
7.00000 10.0256 0.100010 11.4352 0.0928581
8.00000 9.32688 0.103079 11.2992 0.0932782
9.00000 9.05533 0.105088 11.5295 0.0938539
10.0000 9.92991 0.100283 11.2463 0.0946021
11.0000 10.0773 0.0992539 11.0594 0.0955676
12.0000 9.17007 0.106298 10.6793 0.0967491
13.0000 8.20408 0.110395 10.5359 0.0979754
14.0000 7.95304 0.112638 10.4494 0.0990027
15.0000 7.89341 0.112803 10.1798 0.0998917
16.0000 7.12456 0.118062 9.82090 0.100963
17.0000 7.39933 0.116967 9.67732 0.102398
18.0000 7.78264 0.112441 9.21345 0.104175
19.0000 8.59596 0.106939 8.89971 0.106255
20.0000 8.67170 0.107497 8.40992 0.108486
21.0000 8.79939 0.106332 8.11483 0.110458
22.0000 9.12812 0.105206 8.02438 0.111699
23.0000 9.63422 0.101256 7.85372 0.112031
24.0000 10.1258 0.0995095 8.04622 0.111624
25.0000 10.8106 0.0964401 8.22570 0.110721
26.0000 10.4907 0.0973379 8.39732 0.109430
27.0000 9.81701 0.100341 8.49605 0.107793
28.0000 10.6162 0.0974127 8.99748 0.105903
29.0000 10.0543 0.0996875 9.23480 0.103994
30.0000 9.70010 0.101472 9.57122 0.102361
31.0000 9.68858 0.101708 9.89263 0.101116
32.0000 9.52794 0.101676 9.92097 0.100224
33.0000 10.5637 0.0975818 10.0250 0.0997054
34.0000 9.78397 0.100777 9.97885 0.0995768
35.0000 9.69834 0.101275 10.2150 0.0997341
36.0000 9.98752 0.100783 9.81157 0.0999361
37.0000 10.2229 0.0990209 10.0589 0.100024
38.0000 10.6349 0.0968980 10.0366 0.100073
39.0000 10.3095 0.0979626 9.88274 0.100169
40.0000 10.8063 0.0951126 9.95001 0.100230
41.0000 10.8576 0.0961898 9.93254 0.100073
42.0000 11.0283 0.0948915 9.99264 0.0996499
43.0000 11.3431 0.0944636 10.0456 0.0990311
44.0000 10.9497 0.0950889 10.3528 0.0983430
45.0000 11.6750 0.0927961 10.6239 0.0976712
46.0000 11.7398 0.0918948 10.7173 0.0970350
47.0000 12.0419 0.0910967 10.7174 0.0964282
48.0000 12.5050 0.0893909 10.9092 0.0958243
49.0000 12.1528 0.0901180 10.9749 0.0951958
50.0000 13.2853 0.0876756 11.1911 0.0945360
51.0000 13.2477 0.0868076 11.3143 0.0938218
52.0000 13.2737 0.0869808 11.3308 0.0930511
53.0000 13.4963 0.0860270 11.7891 0.0922236
54.0000 13.8486 0.0842024 11.9225 0.0913311
55.0000 14.0255 0.0843238 12.2608 0.0904313
56.0000 13.2712 0.0862851 12.6589 0.0895612
57.0000 12.4751 0.0891995 12.5011 0.0886908
58.0000 12.5323 0.0892506 12.9242 0.0878315
59.0000 12.8992 0.0885207 13.1266 0.0871161
60.0000 13.1741 0.0867656 13.1069 0.0867194
61.0000 13.4742 0.0859448 13.3905 0.0866953
62.0000 13.5065 0.0856387 13.2695 0.0869285
63.0000 13.1393 0.0873250 12.9646 0.0872221
64.0000 13.0864 0.0872569 13.0376 0.0873939
65.0000 12.4548 0.0895150 13.2114 0.0873804
66.0000 11.8028 0.0929012 13.1223 0.0872719
67.0000 11.2808 0.0932674 13.1650 0.0871945
68.0000 11.3354 0.0933298 13.0233 0.0872570
69.0000 11.5443 0.0926183 13.0323 0.0875581
70.0000 11.4608 0.0928539 12.9517 0.0881508
71.0000 11.4608 0.0938145 12.7212 0.0889497
72.0000 10.8992 0.0960987 12.3569 0.0898112
73.0000 10.5799 0.0971217 12.2781 0.0906132
74.0000 9.82603 0.0997068 11.8600 0.0913149
75.0000 10.0442 0.0990730 11.8620 0.0919961
76.0000 9.92676 0.100064 11.5508 0.0927538
77.0000 10.8805 0.0966226 11.2424 0.0936376
78.0000 10.6242 0.0971202 11.2025 0.0946418
79.0000 10.3367 0.0983389 10.7453 0.0956645
80.0000 10.8152 0.0959204 10.7198 0.0965216
81.0000 11.2386 0.0938642 10.5039 0.0970847
82.0000 10.9800 0.0950364 10.5691 0.0973957
83.0000 11.4681 0.0938408 10.5723 0.0975216
84.0000 11.5389 0.0931532 10.4123 0.0974251
85.0000 11.2253 0.0931785 10.7288 0.0970937
86.0000 11.8083 0.0928413 10.7312 0.0965935
87.0000 12.4067 0.0893181 10.8274 0.0959958
88.0000 12.2196 0.0910494 10.8779 0.0953716
89.0000 12.4784 0.0900115 11.0742 0.0948072
90.0000 12.3620 0.0892570 11.4351 0.0942644
91.0000 13.2934 0.0867932 11.3226 0.0936637
92.0000 12.8009 0.0877081 11.5726 0.0930059
93.0000 12.6074 0.0884435 11.5918 0.0923073
94.0000 12.2475 0.0903075 11.7779 0.0915448
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198.000 11.4087 0.0937190 11.5174 0.0933944
199.000 11.3703 0.0936658 11.4705 0.0933883

10
inputfiles/HST1367_i_7647 Normal file
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2
data/STORM_III/lightcurves/Δt≔0.01/HST1367.lc 0
data/STORM_III/lightcurves/Δt≔0.01/i_7647.lc 0
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0:0 0
0
0
100 50 50 mcmc.dat

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2
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data/calibration/lc_1.dat 0
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0:1 1
0
0
100 50 50 mcmc.dat

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2
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1
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HST1367 time boundaries (days)
──────────────────────────────
56691.5
56865.9
Fourier Quantification
──────────────────────
(56865.9 - 56691.5) days = 174.4 days
1 / (174.4 days) = ~0.00573394495412844037 days⁻¹
First 27 Frequencies
────────────────────
Linear Log₁₀
0.00573394495412844037 -2.24154648059654841582
0.01146788990825688074 -1.94051648493256722061
0.01720183486238532111 -1.76442522587688597853
0.02293577981651376148 -1.63948648926858602540
0.02866972477064220185 -1.54257647626052961104
0.03440366972477064222 -1.46339523021290478332
0.04013761467889908259 -1.39644844058229158511
0.04587155963302752296 -1.33845649360460483018
0.05160550458715596333 -1.28730397115722354124
0.0573394495412844037 -1.24154648059654841582
0.06307339449541284407 -1.20015379543832337508
0.06880733944954128444 -1.16236523454892358810
0.07454128440366972481 -1.12760312828971164662
0.08027522935779816518 -1.09541844491831038990
0.08600917431192660555 -1.06545522154086717374
0.09174311926605504592 -1.03742649794062363497
0.09747706422018348629 -1.01109755921827448728
0.10321100917431192666 -0.98627397549324234602
0.10894495412844036703 -0.96279287964371945429
0.1146788990825688074 -0.94051648493256722061
0.12041284403669724777 -0.91932718586262914782
0.12614678899082568814 -0.89912379977434217986
0.13188073394495412851 -0.87981864457895553696
0.13761467889908256888 -0.86133523888494239289
0.14334862385321100925 -0.84360647192451080625
0.14908256880733944962 -0.82657313262573045141
0.15481651376146788999 -0.81018271643756110394
Calibration Bins
────────────────
min max binned #
0.005 0.019 3
0.00573394495412844037 -2.24154648059654841582
0.01146788990825688074 -1.94051648493256722061
0.01720183486238532111 -1.76442522587688597853
0.019 0.0425 4
0.02293577981651376148 -1.63948648926858602540
0.02866972477064220185 -1.54257647626052961104
0.03440366972477064222 -1.46339523021290478332
0.04013761467889908259 -1.39644844058229158511
0.0425 0.07 5
0.04587155963302752296 -1.33845649360460483018
0.05160550458715596333 -1.28730397115722354124
0.0573394495412844037 -1.24154648059654841582
0.06307339449541284407 -1.20015379543832337508
0.06880733944954128444 -1.16236523454892358810
0.07 0.11 7
0.07454128440366972481 -1.12760312828971164662
0.08027522935779816518 -1.09541844491831038990
0.08600917431192660555 -1.06545522154086717374
0.09174311926605504592 -1.03742649794062363497
0.09747706422018348629 -1.01109755921827448728
0.10321100917431192666 -0.98627397549324234602
0.10894495412844036703 -0.96279287964371945429
0.11 0.17 8
0.1146788990825688074 -0.94051648493256722061
0.12041284403669724777 -0.91932718586262914782
0.12614678899082568814 -0.89912379977434217986
0.13188073394495412851 -0.87981864457895553696
0.13761467889908256888 -0.86133523888494239289
0.14334862385321100925 -0.84360647192451080625
0.14908256880733944962 -0.82657313262573045141
0.15481651376146788999 -0.81018271643756110394
0.17 0.24 12 (30-41)
0.24 0.4 28 (42-69)
0.4 0.603 36 (70-105)
Binning Regimes to Try on i band Lightcurve
───────────────────────────────────────────
With lowest frequency
0.0049999999 0.018619375
0.018619375 0.044733049
0.044733049 0.069336227
0.069336227 0.10747115
0.10747115 0.16658029
0.16658029 0.25819945
0.25819945 0.40020915
0.40020915 0.62032418
Next, lets remove that lowest frequency
0.0099999998 0.024025000
0.024025000 0.037238750
0.037238750 0.057720063
0.057720063 0.089466098
0.089466098 0.13867245
0.13867245 0.21494230
0.21494230 0.33316057
0.33316057 0.51639889

56
notes/log Normal file
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Week 1:
Given four papers to read
Giving version 1 of the psdlag program
spent some time exploring the program
mostly read papers
Week 2:
Given calibration data in the form of light curves produced by a known transfer function
Did things, forgot to keep track
Week 3-4ish:
A script has been created to read an output file from psdlag and then plot the source and reprocessed power spectral densities, the cross-correlation power spectral density, and the phase difference between the signals.
scripts/power_lag_plot.pl
2016-
2016-07-11
created gnuplot templates for plotting the timelags and power spectrum densities
- still need to modify this for points to be evenly spaced in log space
2016-07-14
Ran through results with simple error checking and determined they made sense.
Project can continue.
2016-07-15
Determined frequency binning for PSD and timelags:
0.0049999999 0.018619375
0.018619375 0.044733049
0.044733049 0.069336227
0.069336227 0.10747115
0.10747115 0.16658029
0.16658029 0.25819945
0.25819945 0.40020915
0.40020915 0.62032418
2016-07-18
Ran first MCMC run, need to analyze results
2016-07-25
Determined MC is definitely the way to go, with at least 1000 simulations.
Setup scripts to run simulations on Thor, one simulation per processor.
2016-07-26
MC giving huge errors. Putting together plots to send to Dr. Zoghbi.

5
plot.sh Normal file
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#!/usr/bin/env bash
# This metascript uses the available plotting scripts to produce a list of
# document-rady plots.

10
pres/final_notes Normal file
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Intro
continuum reverberation mapping
tradiational approach
our approach
results
future work

29
pres/report/report.tex Normal file
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\begin{abstract}
\section{Introduction}
The study of Active Galactic Nuclei (AGN) promises to inform many fields of physical science. As a standard candle, AGN could provide structural information about the universe beyond the supernova horizon, allowing a better measurement of cosmological parameters such as the Expansion Coefficient.
\subsection{continuing research}
\endsubsection
\subsection{Traditional Reverberation Mapping}
\endsubsection
\subsection{Maximum Likelihood Method}
\endsubsection
\endsection
\section{Results}
\endsection
\section{Future Work}
\endsection

168
scripts/analyze_lightcurves.sh Executable file
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#!/usr/bin/env bash
timestep="0.1"
ref_band='1367Å'
# Parameters for HST(𝛌1367Å) from MC results
refpsd_params="6.533e-02 -9.694e-02 -1.175e+00 -1.525e+00 -2.166e+00 -2.492e+00 -3.258e+00 -9.328e+00"
# Parameters for HST(𝛌1367Å) from covariance matrix estimates
#refpsd_params="7.376e-02 -1.976e-01 -1.182e+00 -1.521e+00 -2.144e+00 -2.503e+00 -3.580e+00 -1.233e+01"
error_type="1"
# error types:
# 0 for covariance matrix, 1 for likelihood function, 2 for monte carlo
case $error_type in
"0") err_src="CM";;
"1") err_src="LF";;
"2") err_src="MC";;
esac
mkdir -p analyses
host=$1
if [[ "$(hostname)" == "thor.cs.wmich.edu" ]]
then
host="thor"
fi
if [[ $host == "thor" ]]
then
echo Setting up Thor environment.
mkdir -p thor
mkdir -p thor/arguments
if [[ -e thor/submissions ]]; then echo "" >> thor/submissions; fi
date >> thor/submissions
echo "─────────────────────────────" >> thor/submissions
fi
lc_dir="data/STORM_III/lightcurves/Δt${timestep}"
echo Using lightcurves in $lc_dir.
ref_curve="${lc_dir}/${ref_band}.lc"
for echo_curve in $lc_dir/*
do
# Determine band and inputs for band
echo_band=$(basename $echo_curve|sed 's@\(.*\)\.lc@\1@')
echo -n $(date "+%R")\: Running psdlag for $echo_band against $ref_band.
outputfile="analyses/${ref_band}_≺_${echo_band}_{Δt${timestep};σ∊${err_src}}"
case $echo_band in
"4775Å")
initial_params="$refpsd_params -9.745e-01 -1.384e+00 -2.748e+00 -3.305e+00 -3.314e+00 -3.389e+00 -4.198e+00 -4.465e+00 -4.700e-01 -7.487e-01 -2.046e+00 -2.428e+00 -2.953e+00 -3.086e+00 -3.761e+00 -4.290e+00 9.862e-02 3.899e-01 8.650e-01 5.516e-01 2.228e-01 9.508e-01 -2.872e-01 9.059e-02"
;;
"1158Å")
initial_params="$refpsd_params 2.504e-01 3.210e-02 -9.091e-01 -1.226e+00 -1.790e+00 -2.227e+00 -2.929e+00 -5.131e+00 1.618e-01 -8.299e-02 -1.045e+00 -1.370e+00 -1.952e+00 -2.338e+00 -3.075e+00 -3.742e+00 -3.301e-02 -7.353e-02 -7.112e-02 -5.938e-02 -4.394e-02 -1.756e-01 -2.617e-01 -1.425e-01"
;;
"1367Å")
initial_params="$refpsd_params 6.534e-02 -9.689e-02 -1.175e+00 -1.525e+00 -2.167e+00 -2.492e+00 -3.258e+00 -1.115e+01 6.378e-02 -9.676e-02 -1.181e+00 -1.520e+00 -2.180e+00 -2.532e+00 -3.129e+00 -3.794e+00 -8.535e-05 -5.126e-04 -4.066e-04 1.080e-03 -2.682e-03 -5.462e-03 -2.209e-02 1.564e-01"
;;
"1479Å")
initial_params="$refpsd_params 0.2e+00 -0.2e+00 -1.0e+00 -1.500e+00 -2.0e+00 -2.6e+00 -3.4e+00 -6e+00 9.340e-02 -8.842e-02 -1.173e+00 -1.512e+00 -2.113e+00 -2.547e+00 -3.178e+00 -7.000e+00 -6.035e-02 2.044e-02 1.258e-01 5.764e-02 2.580e-02 -4.737e-02 9.579e-02 6.411e-01"
;;
"1746Å")
initial_params="$refpsd_params 3.934e-02 -1.638e-01 -1.339e+00 -1.655e+00 -2.232e+00 -2.793e+00 -4.025e+00 -1.072e+01 5.043e-02 -1.304e-01 -1.254e+00 -1.587e+00 -2.207e+00 -2.693e+00 -3.209e+00 -3.820e+00 3.040e-02 2.438e-02 1.450e-01 1.458e-01 1.772e-01 2.076e-01 -1.390e-01 3.929e-01"
;;
"7647Å")
initial_params="$refpsd_params -1.510e+00 -1.872e+00 -3.441e+00 -3.722e+00 -4.794e+00 -4.336e+00 -4.644e+00 -5.061e+00 -7.402e-01 -9.967e-01 -2.393e+00 -2.723e+00 -3.701e+00 -3.742e+00 -4.317e+00 -4.979e+00 2.638e-01 7.095e-01 1.297e+00 1.035e+00 9.267e-01 8.982e-01 7.318e-01 9.092e-01"
;;
"8560Å")
initial_params="$refpsd_params -1.497e+00 -1.786e+00 -3.555e+00 -4.203e+00 -3.826e+00 -4.096e+00 -4.304e+00 -1.109e+01 -7.542e-01 -9.532e-01 -2.397e+00 -3.214e+00 -3.008e+00 -3.489e+00 -4.353e+00 -4.061e+00 1.675e-01 7.660e-01 1.781e+00 1.971e+00 6.572e-01 8.520e-01 2.405e+00 -1.573e-01"
;;
"6175Å")
initial_params="$refpsd_params -1.372e+00 -1.786e+00 -3.214e+00 -3.558e+00 -4.416e+00 -4.366e+00 -4.559e+00 -4.586e+00 -6.693e-01 -5.998e+00 -2.390e+00 -2.927e+00 -3.411e+00 -3.731e+00 -3.930e+00 -7.000e+00 2.905e-01 1.835e+00 8.760e-01 1.476e+00 -3.280e-01 1.439e+00 9.464e-02 1.532e+00"
;;
"6439Å")
initial_params="$refpsd_params -1.287e+00 -1.580e+00 -2.879e+00 -3.569e+00 -3.661e+00 -4.471e+00 -3.998e+00 -5.001e+00 -6.583e-01 -6.900e+00 -2.060e+00 -2.727e+00 -2.954e+00 -3.654e+00 -4.406e+00 -5.203e+00 1.448e-01 -1.004e-01 9.754e-01 1.140e+00 9.284e-01 1.116e+00 2.092e+00 8.634e-01"
;;
#"4392Å")
# initial_params="$refpsd_params -5.0e-01 -1.0e+00 -2.7e+00 -3.7e+00 -4.5e+00 -5.5e+00 -6.5e+00 -7.5e+00 -2.515e-01 -6.156e-01 -1.924e+00 -2.417e+00 -3.053e+00 -6.570e+00 -3.450e+00 -6.333e+00 0.027 0.187189 0.39349 0.479216 0.405156 0.313996 0.486696 0.502917"
# old params initial_params="$refpsd_params -5.0e-01 -1.0e+00 -2.7e+00 -3.7e+00 -4.5e+00 -5.5e+00 -6.5e+00 -7.5e+00 -2.515e-01 -6.156e-01 -1.924e+00 -2.417e+00 -3.053e+00 -6.570e+00 -3.450e+00 -6.333e+00 7.408e-02 3.089e-01 5.057e-01 4.831e-01 5.779e-01 6.277e-01 4.823e-01 6.110e-01"
#;;
"3465Å")
initial_params="$refpsd_params -3.178e-01 -7.537e-01 -2.402e+00 -2.624e+00 -3.413e+00 -3.834e+00 -1.236e+01 -1.071e+01 -1.376e-01 -4.256e-01 -1.794e+00 -2.123e+00 -2.817e+00 -3.029e+00 -4.139e+00 -7.000e+00 7.840e-02 3.388e-01 6.616e-01 1.349e-01 9.909e-01 8.538e-01 1.397e+00 6.412e-01"
;;
"5468Å")
initial_params="$refpsd_params -8.802e-01 -1.441e+00 -2.883e+00 -4.483e+00 -1.045e+01 -1.041e+01 -1.042e+01 -1.078e+01 -4.161e-01 -7.660e-01 -2.020e+00 -3.201e+00 -2.699e+00 -2.859e+00 -3.653e+00 -5.501e+00 1.900e-02 3.560e-01 1.007e+00 -1.270e+00 1.858e+00 9.302e-01 -1.502e+00 2.653e+00"
;;
"3471Å")
initial_params="$refpsd_params -4.289e-01 -9.017e-01 -2.581e+00 -2.751e+00 -2.764e+00 -3.105e+00 -3.298e+00 -3.870e+00 -1.925e-01 -5.093e-01 -1.923e+00 -2.204e+00 -2.568e+00 -2.768e+00 -3.425e+00 -5.982e+00 1.646e-01 4.376e-01 7.202e-01 9.556e-01 4.856e-01 2.985e-01 -6.801e-01 -2.416e+00"
;;
"2246Å")
initial_params="$refpsd_params -1.003e-01 -5.235e-01 -1.863e+00 -2.159e+00 -2.718e+00 -3.504e+00 -1.139e+01 -4.119e+00 -2.431e-02 -3.121e-01 -1.526e+00 -1.877e+00 -2.455e+00 -2.945e+00 -3.356e+00 -3.602e+00 -1.862e-04 1.380e-01 2.475e-01 3.102e-02 6.040e-01 -1.488e-01 1.171e+00 1.617e+00"
;;
"2600Å")
initial_params="$refpsd_params -2.417e-01 -7.027e-01 -1.998e+00 -2.387e+00 -2.912e+00 -4.026e+00 -1.069e+01 -9.716e+00 -9.867e-02 -4.150e-01 -1.587e+00 -1.963e+00 -2.539e+00 -3.274e+00 -3.460e+00 -6.742e+00 6.734e-02 1.353e-01 3.585e-01 1.587e-01 2.959e-01 1.111e-01 2.364e-01 7.463e-01"
;;
#"1928Å")
# initial_params="$refpsd_params -1.648e-01 -4.974e-01 -1.686e+00 -1.897e+00 -2.600e+00 -2.801e+00 -3.814e+00 -9.888e+00 -6.101e-02 -3.020e-01 -1.433e+00 -1.756e+00 -2.485e+00 -2.799e+00 -3.317e+00 -7.000e+00 4.622e-02 1.473e-01 2.243e-01 1.606e-01 2.365e-01 1.484e-01 8.110e-01 9.689e-01"
#;;
"5404Å")
initial_params="$refpsd_params -1.044e+00 -1.457e+00 -2.848e+00 -2.957e+00 -4.232e+00 -4.052e+00 -4.515e+00 -5.250e+00 -5.026e-01 -7.878e-01 -2.118e+00 -2.276e+00 -3.421e+00 -3.378e+00 -4.224e+00 -4.930e+00 9.142e-02 4.814e-01 8.550e-01 3.929e-01 3.975e-01 5.311e-01 -1.203e-01 -2.905e+00"
;;
"9157Å")
initial_params="$refpsd_params -1.852e+00 -2.156e+00 -3.798e+00 -4.146e+00 -4.577e+00 -4.338e+00 -4.672e+00 -5.230e+00 -9.339e-01 -1.131e+00 -2.536e+00 -3.031e+00 -4.060e+00 -3.801e+00 -4.139e+00 -5.151e+00 2.445e-01 8.131e-01 1.621e+00 1.460e+00 2.909e-01 6.991e-01 -5.831e-01 -2.921e-01"
;;
*)
echo -n " Unknown band: using default parameters."
initial_params="$refpsd_params -9.745e-01 -1.384e+00 -2.748e+00 -3.305e+00 -3.314e+00 -3.389e+00 -4.198e+00 -4.465e+00 -4.700e-01 -7.487e-01 -2.046e+00 -2.428e+00 -2.953e+00 -3.086e+00 -3.761e+00 -4.290e+00 9.862e-02 3.899e-01 8.650e-01 5.516e-01 2.228e-01 9.508e-01 -2.872e-01 9.059e-02"
;;
esac
# Write temporary input file
echo "2" > tmp.psdlagargs
echo "$ref_curve 0" >> tmp.psdlagargs
echo "$echo_curve 0" >> tmp.psdlagargs
echo "8 0.0049999999 0.018619375 0.044733049 0.069336227 0.10747115 0.16658029 0.25819945 0.40020915 0.62032418" >> tmp.psdlagargs
echo "0" >> tmp.psdlagargs
echo "$initial_params" >> tmp.psdlagargs
echo "0:0 0" >> tmp.psdlagargs
echo $error_type >> tmp.psdlagargs
echo "0" >> tmp.psdlagargs
# Use 10x num vars for walkers
echo -n "1000 50 400 mcmc_${echo_band}.dat" >> tmp.psdlagargs
# Run psdlag with inputs
if [[ $host == "thor" || "$(hostname)" == "thor.cs.wmich.edu" ]]
then
echo_band_noUTF=$(echo $echo_band|
#sed 's|𝛌||g'|
#sed 's|(|_|g'|
#sed 's|)|_|g'|
sed 's|||g'|
sed 's|Å|A|g')
outputfile_noUTF=$(echo $outputfile|
#sed 's|𝛌||g'|
#sed 's|(|_|g'|
#sed 's|)|_|g'|
sed 's|||g'|
sed 's|[{}]|_|g'|
sed 's|;|_|'|
sed 's|Å|A|g'|
sed 's|_≺_|_|g'|
sed 's|σ∊|err|')
if [[ -e $outputfile_noUTF ]]
then
echo -n " Analysis already exists; skipping."
else
argsfile="thor/arguments/$echo_band_noUTF.args"
submitscript="thor/${echo_band_noUTF}.pbs"
cp tmp.psdlagargs $argsfile
cat scripts/templates/thor_submit.pbs|
sed "s@%NAME%@psdlag_${echo_band_noUTF}@g"|
sed "s@%ARGSFILE%@${argsfile}@g"|
sed "s@%ROOTDIR%@$(pwd)@g"|
sed "s@%OUTPUTFILE%@${outputfile_noUTF}@g" > $submitscript
cd thor
qsub $(basename $submitscript) >> submissions
cd ..
fi
else
if [[ -e $outputfile ]]
then
echo -n " Analysis already exists; skipping."
else
time bin/psdlag tmp.psdlagargs > $outputfile
fi
fi
echo ""
done

286
scripts/create_tables.pl Executable file
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#!/usr/bin/env perl
use utf8;
use Encode qw(encode decode);
use feature 'say';
use locale;
use Switch;
use constant PI => 4 * atan2(1, 1);
# Enables various levels of output.
our $verbose=1;
our $debug=0;
# This section locates the output data of interest in a
# psdlab output file.
if (!${^UTF8LOCALE}) {
say encode($charset,"You are not using UTF-8 encoding. :(");
}
my $charset=$ENV{LANG};
our $outputfilename=decode($charset,$ARGV[0]);
open $outputfile,'<',$outputfilename or die $!;
my $star_linenum_1=0;
my $star_linenum_2=0;
my $star_bytenum_1=0;
my $star_bytenum_2=0;
my $linenum=0;
while(<$outputfile>) {
$linenum++;
if ($_ =~ /^\*+$/) {
$star_linenum_1=$star_linenum_2;
$star_linenum_2 = $linenum;
$star_bytenum_1=$star_bytenum_2;
#$star_bytenum_2 = $outputfile.tell();
$star_bytenum_2 = tell($outputfile);
}
}
if ($debug) {
say encode($charset,"Final set found between lines "),
$star_linenum_1,
" and ",
$star_linenum_2;
say encode($charset,"Final set found between bytes "),
$star_bytenum_1,
" and ",
$star_bytenum_2;
}
seek($outputfile,$star_bytenum_1,0);
<$outputfile>;
$bin_bounds_line = <$outputfile>;
#say $bin_bounds_line;
$bin_bounds_line =~ s/^#\s*(.*)$/$1/;
#$line =~ /
@bin_bounds = split /\s/,$bin_bounds_line;
if ($debug) {
print encode($charset,"Found bin boundaries: ");
foreach (@bin_bounds) {print encode($charset,"$_ ");}
say encode($charset," ");
}
# This captures the frequency bins.
our %function_bin = ();
my $upper_bound = 0;
my $lower_bound = 0;
foreach (@bin_bounds) {
$lower_bound = $upper_bound;
$upper_bound = $_;
if ($lower_bound == 0) {next}
my $μ = ($upper_bound + $lower_bound)/2;
my $Δ = ($upper_bound - $lower_bound)/2;
#say ($μ,":",$Δ);
# push(@freq_coords_mean,$μ);
# push(@freq_coords_err,$Δ);
$function_bin{$μ} = {"Δ" => $Δ};
}
$numbins = keys %function_bin;
say encode($charset,"$numbins frequency bins captured in output.");
if($verbose) {
say encode($charset,"freq μ freq σ");
while (each %function_bin ) {
say encode($charset,
sprintf("%f %f",$_,$function_bin{$_}{"Δ"}));
}
}
=pod
This section collects the various quantities. The mode counter
increments to designate the data being captured.
=cut
if ($verbose) {
say encode($charset,"");
say encode($charset,
" New Curve -- Reference Curve PSD");
say encode($charset,
"──────────────────────────────────────────────────");
}
foreach ( sort { $a <=> $b } keys %function_bin ) {
my $μ = my $σ = <$outputfile>;
$μ =~ s/^([\-\+e0-9\.]+)+\s+[\-\+e0-9\.]+\s*$/$1/;
$σ =~ s/^[\-\+e0-9\.]+\s+([\-\+e0-9\.]+)\s*$/$1/;
# if ($μ<0) {
# $μ = abs($μ);
# $function_bin{$_}{"φdiff_μ"} = PI;
# }
$function_bin{$_}{"ref_PSD_μ"} = $μ;
$function_bin{$_}{"ref_PSD_σ"} = $σ;
if ($verbose) {
say encode($charset,
"freq = " .
sprintf('%.3f',$_) .
": μ = " .
sprintf('%10.3e',$μ) .
"; σ = " .
sprintf('%10.3e',$σ));
}
}
if ($verbose) {
say encode($charset,"");
say encode($charset,
" New Curve -- Reverberating Curve PSD");
say encode($charset,
"──────────────────────────────────────────────────");
}
foreach ( sort { $a <=> $b } keys %function_bin ) {
my $μ = my $σ = <$outputfile>;
$μ =~ s/^([\-\+e0-9\.]+)+\s+[\-\+e0-9\.]+\s*$/$1/;
$σ =~ s/^[\-\+e0-9\.]+\s+([\-\+e0-9\.]+)\s*$/$1/;
# if ($μ<0) {
# $μ = abs($μ);
# $function_bin{$_}{"φdiff_μ"} = PI;
# }
$function_bin{$_}{"echo_PSD_μ"} = $μ;
$function_bin{$_}{"echo_PSD_σ"} = $σ;
if ($verbose) {
say encode($charset,
"freq = " .
sprintf('%.3f',$_) .
": μ = " .
sprintf('%10.3e',$μ) .
"; σ = " .
sprintf('%10.3e',$σ));
}
}
if ($verbose) {
say encode($charset,"");
say encode($charset,
" New Curve -- Cross Spectrum PSD");
say encode($charset,
"──────────────────────────────────────────────────");
}
foreach ( sort { $a <=> $b } keys %function_bin ) {
my $μ = my $σ = <$outputfile>;
$μ =~ s/^([\-\+e0-9\.]+)+\s+[\-\+e0-9\.]+\s*$/$1/;
$σ =~ s/^[\-\+e0-9\.]+\s+([\-\+e0-9\.]+)\s*$/$1/;
# if ($μ<0) {
# $μ = abs($μ);
# $function_bin{$_}{"φdiff_μ"} = PI;
# }
$function_bin{$_}{"crsspctrm_PSD_μ"} = $μ;
$function_bin{$_}{"crsspctrm_PSD_σ"} = $σ;
if ($verbose) {
say encode($charset,
"freq = " .
sprintf('%.3f',$_) .
": μ = " .
sprintf('%10.3e',$μ) .
"; σ = " .
sprintf('%10.3e',$σ));
}
}
if ($verbose) {
say encode($charset,"");
say encode($charset,
" New Curve -- Phase Difference φ");
say encode($charset,
"──────────────────────────────────────────────────");
}
foreach ( sort { $a <=> $b } keys %function_bin ) {
my $μ = my $σ = <$outputfile>;
$μ =~ s/^([\-\+e0-9\.]+)+\s+[\-\+e0-9\.]+\s*$/$1/;
$σ =~ s/^[\-\+e0-9\.]+\s+([\-\+e0-9\.]+)\s*$/$1/;
if (exists $function_bin{$_}{"φdiff_μ"}) {
$μ = $function_bin{$_}{"φdiff_μ"} + $μ;
}
$function_bin{$_}{"φdiff_μ"} = $μ;
$function_bin{$_}{"φdiff_σ"} = $σ;
if ($verbose) {
say encode($charset,
"freq = " .
sprintf('%.3f',$_) .
": μ = " .
sprintf('%10.3e',$μ) .
"; σ = " .
sprintf('%10.3e',$σ));
}
$μ = $μ/(2*PI*$_);
$σ = $σ/(2*PI*$_);
$function_bin{$_}{"timelag_μ"} = $μ;
$function_bin{$_}{"timelag_σ"} = $σ;
if ($verbose) {
say encode($charset,
" timelag: μ = " .
sprintf('%10.3e',$μ) .
"; σ = " .
sprintf('%10.3e',$σ)) .
"\n";
}
}
say encode($charset,"");
if($debug) {
while (each %function_bin ) {
print encode($charset,$_ . ": ");
while ( my ($key,$value) = each %{$function_bin{$_}} ) {
print encode($charset,$key . " => " . $value . "; ");
}
say encode($charset,"");
}
}
close($outputfile);
open($datafile,'>',"tmp.refPSD") or die $!;
while( each %function_bin) {
say $datafile
$_ . " " .
$function_bin{$_}{"ref_PSD_μ"} . " " .
$function_bin{$_}{"Δ"} . " " .
$function_bin{$_}{"ref_PSD_σ"};
}
close($datafile);
open($datafile,'>',"tmp.echoPSD") or die $!;
while( each %function_bin) {
say $datafile
$_ . " " .
$function_bin{$_}{"echo_PSD_μ"} . " " .
$function_bin{$_}{"Δ"} . " " .
$function_bin{$_}{"echo_PSD_σ"};
}
close($datafile);
open($datafile,'>',"tmp.crsspctrmPSD") or die $!;
while( each %function_bin) {
say $datafile
$_ . " " .
$function_bin{$_}{"crsspctrm_PSD_μ"} . " " .
$function_bin{$_}{"Δ"} . " " .
$function_bin{$_}{"crsspctrm_PSD_σ"};
}
close($datafile);
open($datafile,'>',"tmp.timelag") or die $!;
while( each %function_bin) {
say $datafile
$_ . " " .
$function_bin{$_}{"timelag_μ"} . " " .
$function_bin{$_}{"Δ"} . " " .
$function_bin{$_}{"timelag_σ"};
}
close($datafile);
#open($datafile,'>',"tmp.echoPSD") or die $!;

13
scripts/fix_swapped_names.sh Executable file
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#!/usr/bin/env bash
for analysis in analyses/*
do
# Grab and determine labels of analyses
ref_band=$(basename $analysis|sed 's|[^≻]*_≻_\([^≻_]*\)_[^_]*_[^_]*|\1|')
echo_band=$(basename $analysis|sed 's|\([^≻]*\)_≻_[^≻_]*_[^_]*_[^_]*|\1|')
timestep_str=$(basename $analysis|sed 's|[^≻]*_≻_[^≻_]*_\([^_]*\)_σ∊[CLM][MFC]|\1|')
err_str=$(basename $analysis|sed 's|[^≻]*_≻_[^≻_]*_[^_]*_\(σ∊[CLM][MFC]\)|\1|')
newname="${ref_band}_≺_${echo_band}_${timestep_str}_${err_str}"
mv $analysis analyses/$newname
done

22
scripts/fix_thor_names.sh Executable file
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#!/usr/bin/env bash
for analysis in analyses/*A_*
do
if [[ $analysis == "analyses/*A_*" ]]; then continue; fi
echo Restoring unicode characters to $analysis.
new_name=$(basename $analysis|
#sed 's|_\([0-9]\+\)|\(𝛌=\1|g'|
sed 's|_|≺|'|
sed 's|A|Å|'|
sed 's|A_|Å%|'|
sed 's|_|{|'|
sed 's|_|;|'|
sed 's|_||g'|
#sed 's|_|}|'|
sed 's|≺|_≺_|'|
sed 's|Å%|Å_|'|
sed 's|Δt|Δt|'|
sed 's|err|σ∊|')}
mv $analysis analyses/$new_name
done

74
scripts/gaussian_fit.py Normal file
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import numpy as np
from astropy.modeling import models, fitting
# Using Models
# The astropy.modeling package defines a number of models that are collected under a single namespace as astropy.modeling.models. Models behave like parametrized functions:
from astropy.modeling import models
g = models.Gaussian1D(amplitude=1.2, mean=0.9, stddev=0.5)
print(g)
# Model: Gaussian1D
# Inputs: ('x',)
# Outputs: ('y',)
# Model set size: 1
# Parameters:
# amplitude mean stddev
# --------- ---- ------
# 1.2 0.9 0.5
#
# Model parameters can be accessed as attributes:
g.amplitude
# Parameter('amplitude', value=1.2)
g.mean
# Parameter('mean', value=0.9)
g.stddev
# Parameter('stddev', value=0.5)
# and can also be updated via those attributes:
g.amplitude = 0.8
g.amplitude
# Parameter('amplitude', value=0.8)
# Models can be evaluated by calling them as functions:
g(0.1)
# 0.22242984036255528
g(np.linspace(0.5, 1.5, 7))
# array([ 0.58091923, 0.71746405, 0.7929204 , 0.78415894, 0.69394278,
# 0.54952605, 0.3894018 ])
import numpy as np
import matplotlib.pyplot as plt
from astropy.modeling import models, fitting
# Generate fake data
np.random.seed(0)
x = np.linspace(-5., 5., 200)
y = 3 * np.exp(-0.5 * (x - 1.3)**2 / 0.8**2)
y += np.random.normal(0., 0.2, x.shape)
# Fit the data using a box model
t_init = models.Trapezoid1D(amplitude=1., x_0=0., width=1., slope=0.5)
fit_t = fitting.LevMarLSQFitter()
t = fit_t(t_init, x, y)
# Fit the data using a Gaussian
g_init = models.Gaussian1D(amplitude=1., mean=0, stddev=1.)
fit_g = fitting.LevMarLSQFitter()
g = fit_g(g_init, x, y)
# Plot the data with the best-fit model
plt.figure(figsize=(8,5))
plt.plot(x, y, 'ko')
plt.plot(x, t(x), label='Trapezoid')
plt.plot(x, g(x), label='Gaussian')
plt.xlabel('Position')
plt.ylabel('Flux')
plt.legend(loc=2)
plt.show()

88
scripts/heasoft_to_psdlag.pl Executable file
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#!/usr/bin/env perl
use feature say;
use utf8;
# reads (stdin) a heasoft data set (single filter) as compiled circa 2016 by Cackett @ WSU
# outputs (stdout) a lightcurve in psdlag circa 2016 Zoghbi @ UMY input format
# smallest time interval.
my $Δt = 0.1;
# normalization factor based on inspection of data
my $flux_norm = 1e14;
# This sets up the capture widths for rounding
# Add two because need to read more digits for rounding
$keep_digits = -1 * log10($Δt) + 2;
$throw_digits = 5 - $keep_digits;
# Skip first line -- shouldn't need this for a single filter
<>;
#Start file Δt and with number of light curves (1)
my $linetoprint="# $Δt 1";
my $num_avg = 0;
while (<>) {
$_ =~ /^.{8}\s+([0-9]{4})\s+([0-9]{5})\.([0-9]{$keep_digits})[0-9]{$throw_digits}(.*)/;
# wavelength/label, characteristic, mantissa, everything else
($λ, $t𝓃, $t𝜀, $vals) = ($1,$2,$3,$4);
# Round t according to Δt
if (!(chop($t𝜀) == 0) + chop($t𝜀) > 5) {$t𝜀++;}
if ($t𝜀 >= (1/$Δt)) {
$t𝓃 += 1;
$t𝜀 = 0;
}
if ($Δt >= 1) { $t𝜀 = 0; }
# Print all values for this line
# say "$λ\t$t𝓃.$t𝜀$vals";
# Compile variables for this line
($flux_μ,$flux_σ,$mag_μ,$mag_σ,$telescope_id) = split ' ',$vals;
$flux_μ *= $flux_norm;
$flux_σ *= $flux_norm;
# Print light curve for psdlag
# This mess to average measurements occuring at the same time coordinate
$this_t = "$t𝓃.$t𝜀";
if ($this_t == $last_t) {
if ($heap_count == 1) {
if ( $linetoprint =~ /([0-9\.]+)\s+([0-9e\-\.]+)\s+([0-9e\-\.]+)/ ) {
our $new_flux_μ = $flux_μ + $2;
# Could just take the max error
# $new_flux_σ = max($flux_σ,$3);
# Average error seems fair
our $new_flux_σ = $flux_σ + $3;
$num_avg++;
}
else { die "Malformed data"; }
}
else {
$new_flux_μ += $flux_μ;
$new_flux_σ += $flux_σ;
}
$heap_count++;
}
else {
if ($heap_count > 1) {
$new_flux_μ /= $heap_count;
$new_flux_σ /= $heap_count;
$linetoprint="$last_t $new_flux_μ $new_flux_σ";
our $heap_count = 1;
}
say $linetoprint;
$linetoprint = "$this_t $flux_μ $flux_σ";
}
$last_t = $this_t;
}
say $linetoprint;
sub max ($$) { $_[$_[0] < $_[1]] }
sub min ($$) { $_[$_[0] > $_[1]] }
sub log10 {
my $n = shift;
return log($n)/log(10);
}

211
scripts/lc_plot.pl Executable file
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#!/usr/bin/env perl
use utf8;
use Encode qw(encode decode);
use feature 'say';
use locale;
use Switch;
# This needs to be rewritten to plot the lightcurves instead
# of the PSD and timelags.
# Enables debug output.
our $debug=0;
our #verbose=0;
# This section locate the output data of interest in a
# psdlab output file.
if (!${^UTF8LOCALE}) {
say encode($charset,"You are not using UTF-8 encoding. :(");
}
my $charset=$ENV{LANG};
our $outputfilename=decode($charset,$ARGV[0]);
open $outputfile,'<',$outputfilename or die $!;
my $star_linenum_1=0;
my $star_linenum_2=0;
my $star_bytenum_1=0;
my $star_bytenum_2=0;
my $linenum=0;
while(<$outputfile>) {
$linenum++;
if ($_ =~ /^\*+$/) {
$star_linenum_1=$star_linenum_2;
$star_linenum_2 = $linenum;
$star_bytenum_1=$star_bytenum_2;
#$star_bytenum_2 = $outputfile.tell();
$star_bytenum_2 = tell($outputfile);
}
}
if ($debug) {
say encode($charset,"Final set found between lines "),
$star_linenum_1,
" and ",
$star_linenum_2;
say encode($charset,"Final set found between bytes "),
$star_bytenum_1,
" and ",
$star_bytenum_2;
}
seek($outputfile,$star_bytenum_1,0);
<$outputfile>;
$bin_bounds_line = <$outputfile>;
#say $bin_bounds_line;
$bin_bounds_line =~ s/^#\s*(.*)$/$1/;
#$line =~ /
@bin_bounds = split /\s/,$bin_bounds_line;
if ($debug) {
print encode($charset,"Found bin boundaries: ");
foreach (@bin_bounds) {print encode($charset,"$_ ");}
say encode($charset," ");
}
# These arrays store the various quantities of interest.
@freq_coords_avg = [];
@freq_coords_err = [];
@power_curve_source_avg = [];
@power_curve_source_err = [];
@power_curve_reprocessed_avg = [];
@power_curve_reprocessed_err = [];
@cross_correlation_power_curve_avg = [];
@cross_correlation_power_curve_err = [];
@phase_difference_avg = [];
@phase_difference_err = [];
@time_lag_avg = [];
@time_lag_err = [];
# This captures the frequency bins.
my $upper_bound = 0;
my $lower_bound = 0;
foreach (@bin_bounds) {
$lower_bound = $upper_bound;
$upper_bound = $_;
if ($lower_bound == 0) {next}
my $avg = ($upper_bound + $lower_bound)/2;
my $err = ($upper_bound - $lower_bound)/2;
#say ($avg,":",$err);
push(@freq_coords_avg,$avg);
push(@freq_coords_err,$err);
}
$numbins = scalar @freq_coords_avg;
say encode($charset,"$numbins frequency boundaries captured.");
# This section collects the various quantities. The mode counter
# increments to designate the data being captured.
my $mode=0;
while (<$outputfile>) {
next if $_ =~ /\*+/;
switch ($mode) {
case 0 {
my $avg = my $err = $_;
$avg =~ s/^([\-\+e0-9\.]+)+\s+[\-\+e0-9\.]+\s*$/$1/;
$err =~ s/^[\-\+e0-9\.]+\s+([\-\+e0-9\.]+)\s*$/$1/;
if ($debug) {
say encode($charset,"");
say encode($charset," New Bin");
say encode($charset,"─────────────────────────────────────────────────");
print encode($charset,"Driving light curve power from $_");
say encode($charset,"Average: $avg, Err: $err");
}
push(@power_curve_source_avg,$avg);
push(@power_curve_source_err,$err);
$mode++;
}
case 1 {
my $avg = my $err = $_;
$avg =~ s/^([\-\+e0-9\.]+)+\s+[\-\+e0-9\.]+\s*$/$1/;
$err =~ s/^[\-\+e0-9\.]+\s+([\-\+e0-9\.]+)\s*$/$1/;
if ($debug) {
print encode($charset,"Reprocessed light curve power from $_");
say encode($charset,"Average: $avg, Err: $err");
}
push(@power_curve_reprocessed_avg,$avg);
push(@power_curve_reprocessed_err,$err);
$mode++;
}
case 2 {
my $avg = my $err = $_;
$avg =~ s/^([\-\+e0-9\.]+)+\s+[\-\+e0-9\.]+\s*$/$1/;
$err =~ s/^[\-\+e0-9\.]+\s+([\-\+e0-9\.]+)\s*$/$1/;
if ($debug) {
print encode($charset,"Cross-Correlation from $_");
say encode($charset,"Average: $avg, Err: $err");
}
push(@cross_correlation_power_curve_avg,$avg);
push(@cross_correlation_power_curve_err,$err);
$mode++;
}
case 3 {
my $avg = my $err = $_;
$avg =~ s/^([\-\+e0-9\.]+)\s+[\-\+e0-9\.]+\s*$/$1/;
$err =~ s/^[\-\+e0-9\.]+\s+([\-\+e0-9\.]+)\s*$/$1/;
if ($debug) {
print encode($charset,"Phase different from $_");
say encode($charset,"Average: $avg, Err: $err");
}
push(@phase_difference_avg,$avg);
push(@phase_difference_err,$err);
$mode = 0;
}
} # End switch
}
$numvals = scalar @power_curve_source_avg;
say encode($charset,"Saved $numvals sets of quantities.");
=pod
Tried to set up the program to find the boundaries on its own.
Should return to complete the program this way; just a syntax
problem.
#while (<$outputfile>) {say $_;}
#while (<$outputfile> =~ /^[^#]+(.*)$/) {}
#if (eof($outputfile)) {
# say encode($charset,"Could not scrape values of energy bin boundaries.");
# exit 9;
#}
=cut
#$thing = <$outputfile>;
#say encode($charset,"$thing");
# switch ($val) {
# case 1 { print encode($charset,"number 1" )}
# case "a" { print encode($charset,"string a" )}
# case [1..10,42] { print encode($charset,"number in list" )}
# case (@array) { print encode($charset,"number in list" )}
# case /\w+/ { print encode($charset,"pattern" )}
# case qr/\w+/ { print encode($charset,"pattern" )}
# case (%hash) { print encode($charset,"entry in hash" )}
# case (\%hash) { print encode($charset,"entry in hash" )}
# case (\&sub) { print encode($charset,"arg to subroutine" )}
# else { print encode($charset,"previous case not true" )}
# }

83
scripts/plot_MC_against_CM.sh Executable file
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for table in analyses/tables/timelag*MC}.tab
do
#ref_band=$(basename $table|sed 's|\([^≺]*\)_≺_[^≺_]*_[^_]*_[^_]*\.tab|\1|')
#echo_band=$(basename $table|sed 's|[^≺]*_≺_\([^≺_]*\)_[^_]*_[^_]*\.tab|\1|')
CMtable=$(echo $table|sed 's|∊MC|∊CM|')
ref_band=$(basename $table|sed 's|timelag_\([^≺]*\)[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*}.tab|\1|')
echo_band=$(basename $table|sed 's|timelag_[^≺]*[_ ]≺[_ ]\([^≺_ ]*\)[_ ]{[^_ ]*}.tab|\1|')
if [[ $ref_band == $echo_band ]]; then continue; fi
err_str=$(basename $table|sed 's|timelag_[^≺]*[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*\(σ∊[CLM][MFC]\)}.tab|\1|')
echo Plotting timelag error fit comparison for $echo_band.
plotfile=analyses/plots/timelag_${echo_band}_error_compare.png
echo_band_noUTF=$(echo $echo_band|
sed 's|𝛌|λ|g'|
#sed 's|(|_|g'|
#sed 's|)|_|g'|
sed 's||=|g'|
sed 's|Å|A|g')
ref_band_noUTF=$(echo $ref_band|
sed 's|𝛌|λ|g'|
#sed 's|(|_|g'|
#sed 's|)|_|g'|
sed 's||=|g'|
sed 's|Å|A|g')
cat scripts/templates/timelag_compare.gp|
sed "s|%TITLE|Error Fit Comparison for Time Lag of $echo_band|"|
sed "s|%SUBTITLE|referred to ${ref_band}, as reported by Fausnaugh et. al, STORM III, 2016|"|
sed "s|%FILE1|$table|"|
sed "s|%LABEL1|${echo_band} Delay with Monte Carlo Fit|"|
sed "s|%FILE2|$CMtable|"|
sed "s|%LABEL2|${echo_band} Delay with Covariance Matrix Fit|"|
sed "s|%YMIN|$ymin|"|sed "s|%YMAX|$ymax|"|
sed "s|%OUTPUTFILE|$plotfile|" > tmp.gp
gnuplot tmp.gp
done
for table in analyses/tables/PSD*MC}.tab
do
#ref_band=$(basename $table|sed 's|\([^≺]*\)_≺_[^≺_]*_[^_]*_[^_]*\.tab|\1|')
#echo_band=$(basename $table|sed 's|[^≺]*_≺_\([^≺_]*\)_[^_]*_[^_]*\.tab|\1|')
CMtable=$(echo $table|sed 's|∊MC|∊CM|')
echo_band=$(basename $table|sed 's|PSD[_ ]\([0-9]\{4\}\)Å[_ ]{[^_ ]*}.tab|\1Å|')
if [[ $ref_band == $echo_band ]]; then continue; fi
err_str=$(basename $table|sed 's|PSD[ _]\([0-9]\{4\}\)Å[_ ]{[^_ ]*\(σ∊[CLM][MFC]\)}.tab|\1|')
echo Plotting PSD error fit comparison for $echo_band.
plotfile=analyses/plots/PSD_${echo_band}_error_compare.png
echo_band_noUTF=$(echo $echo_band|
sed 's|𝛌|λ|g'|
#sed 's|(|_|g'|
#sed 's|)|_|g'|
sed 's||=|g'|
sed 's|Å|A|g')
ref_band_noUTF=$(echo $ref_band|
sed 's|𝛌|λ|g'|
#sed 's|(|_|g'|
#sed 's|)|_|g'|
sed 's||=|g'|
sed 's|Å|A|g')
cat scripts/templates/psd_freq.gp|
sed "s|%TITLE|Error Fit Comparison for PSD of $echo_band|"|
sed "s|%SUBTITLE|as reported by Fausnaugh et. al, STORM III, 2016|"|
sed "s|%FILE1|$table|"|
sed "s|%LABEL1|${echo_band} PSD with Monte Carlo Fit|"|
sed "s|%FILE2|$CMtable|"|
sed "s|%LABEL2|${echo_band} PSD with Covariance Matrix Fit|"|
sed "s|%YMIN|$ymin|"|sed "s|%YMAX|$ymax|"|
sed "s|%OUTPUTFILE|$plotfile|" > tmp.gp
gnuplot tmp.gp
done

77
scripts/plot_psdlag.sh Executable file
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@ -0,0 +1,77 @@
#!/usr/bin/env bash
ywindow_of () {
max=0
min=-5
while read line
# for line in $(cat $1)
do
read xval yval xerr yerr <<< $line
echo $xval $yval
if (bc <<< "$yval > $max"); then max=$yval; fi
if (bc <<< "$yval < $min"); then min=$yval; fi
# done
done < $1
echo $(bc <<< "$min - 0.5") $(bc <<< "$max + 0.5")
}
mkdir -p analyses/tables
mkdir -p analyses/plots
# Restore the proper naming conventions for any files stripped
# of their unicode characters.
scripts/fix_thor_names.sh
# Create tables and plot the power spectra distributions and time lags.
for analysis in analyses/*
do
# Grab and determine labels of analyses, skip if over the same band.
ref_band=$(basename $analysis|sed 's|\([^≺]*\)[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*}|\1|')
echo_band=$(basename $analysis|sed 's|[^≺]*[_ ]≺[_ ]\([^≺_ ]*\)[_ ]{[^_ ]*}|\1|')
if [[ $ref_band == $echo_band ]]; then continue; fi
err_str=$(basename $analysis|sed 's|[^≺]*[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*;\(σ∊[CLM][MFC]\)}|\1|')
# Prepare files
echo "Plotting PSD and time lags for $echo_band, referred to ${ref_band}."
echoPSD_tabfile=analyses/tables/PSD_${echo_band}_\{${err_str}\}.tab
refPSD_tabfile=analyses/tables/PSD_${ref_band}_\{${err_str}\}.tab
timelag_tabfile=analyses/tables/timelag_${ref_band}_≺_${echo_band}_\{${err_str}\}.tab
PSD_plotfile=analyses/plots/PSD_${ref_band}_≺_${echo_band}_\{${err_str}\}.png
timelag_plotfile=analyses/plots/timelag_${ref_band}_≺_${echo_band}_\{${err_str}\}.png
# Output curves to temporary files using perl script, move tables to
# permanent location. This just assumes there are no conflicts.
scripts/create_tables.pl $analysis > /dev/null
mv tmp.echoPSD $echoPSD_tabfile
mv tmp.refPSD $refPSD_tabfile
mv tmp.timelag $timelag_tabfile
# Plot PSD and save using gnuplot
# read ymin ymax <<< $(ywindow_of $timelag_tabfile)
# echo $ymin $ymax
cat scripts/templates/psd_freq.gp|
sed "s|%TITLE|Power Spectrum for Lightcurves $echo_band and $ref_band|"|
sed "s|%SUBTITLE|as reported by Fausnaugh et. al, STORM III, 2016|"|
sed "s|%FILE1|$refPSD_tabfile|"|
sed "s|%LABEL1|${ref_band} PSD|"|
sed "s|%FILE2|$echoPSD_tabfile|"|
sed "s|%LABEL2|${echo_band} PSD|"|
sed "s|%YMIN|$ymin|"|sed "s|%YMAX|$ymax|"|
sed "s|%OUTPUTFILE|$PSD_plotfile|" > tmp.gp
gnuplot tmp.gp
# Plot time lags and save using gnuplot
# read ymin ymax <<< $(ywindow_of $timelag_tabfile)
cat scripts/templates/timelag_freq.gp|
sed "s|%TITLE|Time Lag for Lightcurve $echo_band relative to $ref_band|"|
sed "s|%SUBTITLE|as reported by Fausnaugh et. al, STORM III, 2016|"|
sed "s|%FILE1|$timelag_tabfile|"|
sed "s|%LABEL1|${echo_band} Lag|"|
sed "s|%YMIN|$ymin|"|sed "s|%YMAX|$ymax|"|
sed "s|%OUTPUTFILE|$timelag_plotfile|" > tmp.gp
gnuplot tmp.gp
done
rm tmp.*

12
scripts/prep_lcfiles.sh Executable file
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@ -0,0 +1,12 @@
#!/usr/bin/env bash
timestep="0.1"
newdir="data/STORM_III/lightcurves/Δt${timestep}"
mkdir -p $newdir
for file in data/STORM_III/raw/separated/*
do
newfile=$(basename $file|sed 's@\(.*\)\.tab@\1.lc@')
scripts/heasoft_to_psdlag.pl < $file > ${newdir}/${newfile}
echo Processed $file
done

5688
scripts/spec.py Normal file

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@ -0,0 +1,29 @@
# This method assumes y values are in logarithm units already.
set terminal pngcairo
set output "%OUTPUTFILE"
set termoption dash
set termopt enhanced
set title "%TITLE\n{/*0.7 %SUBTITLE}"
set xlabel "Temporal Frequency [days^{-1}]"
set xrange [0.005:0.620]
# Use this if you want to show PSD directly on a log axis
# set logscale xy
# set ylabel "PSD"
# set yrange [%YMIN:%YMAX]
# plot '%FILE1' using 1:(10**($2+2)):3:4 with xyerrorbars title "%LABEL1", \
# '%FILE2' using 1:(10**($2+2)):3:4 with xyerrorbars title "%LABEL2"
# Use this if you want to show the log value of the PSD
set logscale x
set ylabel "log_{10} PSD"
#set yrange [%YMIN:%YMAX]
#set yrange [-5.5:0.5]
set key outside
set key center bottom
plot '%FILE1' using 1:2:3:4 with xyerrorbars title "%LABEL1", \
'%FILE2' using 1:2:3:4 with xyerrorbars title "%LABEL2"

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@ -0,0 +1,9 @@
#!/bin/sh -login
#PBS -l mem=64GB
#PBS -l nodes=1:ppn=1:research
#PBS -l walltime=48:00:00
#PBS -N "%NAME%"
#PBS -j oe
cd %ROOTDIR%
time ~/psdlag-agn/bin/psdlag '%ROOTDIR%/%ARGSFILE%' > '%ROOTDIR%/%OUTPUTFILE%'

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@ -0,0 +1,22 @@
set terminal pngcairo
set termoption dash
set termopt enhanced
set output "%OUTPUTFILE"
set encoding utf8
set title "%TITLE\n{/*0.7 %SUBTITLE}"
set xlabel "Temporal Frequency [days^{-1}]"
set xrange [0.005:0.620]
set logscale x
set ylabel "Lag [days]"
#set yrange [%YMIN:%YMAX]
#set yrange [-5:7]
set key outside
set key center bottom
# Draw line at origin
set arrow from 0.005,0 to 0.620,0 nohead lt 3 lc rgb 'black'
set pointsize 0
plot '%FILE1' using 1:2:3:4 with xyerrorbars title "%LABEL1", \
"%FILE2" using 1:2:3:4 with xyerrorbars title "%LABEL2"

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@ -0,0 +1,17 @@
set terminal png
set termoption dash
set output "%OUTPUTFILE"
set title "%TITLE\n{/*0.7 %SUBTITLE}"
set xlabel "Temporal Frequency [days^{-1}]"
set xrange [0.005:0.620]
set logscale x
set ylabel "Lag [days]"
#set yrange [%YMIN:%YMAX]
# Draw line at origin
set arrow from 0.005,0 to 0.603,0 nohead lt 3 lc rgb 'black'
plot '%FILE1' using 1:2:3:4 with xyerrorbars title "%LABEL1"

26
scripts/tophat_fft.pl Executable file
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@ -0,0 +1,26 @@
#!/usr/bin/env perl
use feature say;
use utf8;
use PDL::FFT;
my $PI = 3.1415926539;
my $N = 64;
my ($series, $other_series);
for (my $k=0; $k<$N; $k++) {
$series->[$k] = sin(4*$k*$PI/$N) + cos(6*$k*$PI/$N);
}
my $fft = new Math::FFT($series);
my $coeff = $fft->rdft();
my $spectrum = $fft->spctrm;
my $original_data = $fft->invrdft($coeff);
for (my $k=0; $k<$N; $k++) {
$other_series->[$k] = sin(16*$k*$PI/$N) + cos(8*$k*$PI/$N);
}
my $other_fft = $fft->clone($other_series);
my $other_coeff = $other_fft->rdft();
my $correlation = $fft->correl($other_fft);
sub top_hat

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@ -1,47 +0,0 @@
data check.dat
read f 1
read pow 2
limits f pow
box
ptype 10 3
points f pow
quit
data check.dat
read f 1
read pow 2
limits f pow
ptype 10 3
points f pow
box
quit
data check.dat
read f 1
read pow 2
limits f pow
box
ptype 10 3
points f pow
set lgf = log10(f)
set lgf = alog10(f)
set lgf = lg(f)
erase
box
erase
limits lgf pow
points lgf pow
box
erase
limits lgf 0. 3.
box
points lgf pow
quit
data check.dat
read 1 f
read f 1
read pow 2
set lgf = lg(f)
limits lgf pow
box
ptype 10 3
points lgf pow
quit

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@ -1,32 +0,0 @@
To compile, modify the file makefile to so that libdir and incdir point to where
alglib library and header files are installed respectively, then run: make
FILES:
- README: this file
- makefile: a make file for compiling
- main.cpp: the main file, that process the input file, print help message if
needed and reads the light curves files. check readLC to see the light curve
format.
- mod.cpp: contains the class mod, which is a base class that uses the likelihood method. This on its own does nothing, but it is meant to be inherited by others, e.g. psd , lag , lag10
etc ... It is here where the likelihood is calculated, and maximized.
- psd.cpp: a child class of mod to calculate psds. psd10 is similar by it
calculate the log10 of psd. This is better than calculating the psd directly.
- lag.cpp: a child class of mod to calculate cross spectra and phase lags.
similar to psd. there is also lag10 that calcualte the log10 of the cross
spectrum plus phase lag.
- psdlag.cpp: a child class of mod to calculate psd and cross spec and phase
lag at the same time.
- inc: contains the header files.
- inc/mod.hpp: the header for mod.cpp. This file has the Mod class also, which
is a class that holds multiple mod's used for fitting multiple light curve
simultaneusly, each mod fits for one light curve, and the total log-likelihood
is the sum of individual likelihood (i.e. product of probabilities)

BIN
src/archive/newsrc.tar Normal file

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@ -1,6 +0,0 @@
2.5e-5 4.681
5.5e-5 3.358
8.5e-5 2.911
1.5e-4 2.650
2.5e-4 1.864
3.5e-4 0.605

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@ -1,6 +0,0 @@
1.022e-01 9.694e-01
3.260e-01 9.192e-01
5.118e-01 9.776e-01
3.254e-01 9.269e-01
1.000e+00 9.659e-01
1.000e+00 9.891e-01

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@ -8,7 +8,7 @@
#ifndef DEF_HPP_
#define DEF_HPP_
#include <ap.h>
#include <alglib/ap.h>
#include <iostream>
#include <iomanip>
@ -25,7 +25,7 @@ public:
int len; double dt; vec lc,lce,t;
lcurve(int n=1){t.setlength(n); lc.setlength(n); lce.setlength(n) ;len=n;dt=1.0;}
lcurve(vec& t_,vec& lc_,vec& lce_,double dt_){t=t_;lc=lc_;lce=lce_;len=t.length();dt=dt_;}
void demean(){double m=0;int i;for(i=0;i<len;i++){m+=lc[i];} m/=len;for(i=0;i<len;i++){lc[i]-=m;}}
double demean(){double m=0;int i;for(i=0;i<len;i++){m+=lc[i];} m/=len;for(i=0;i<len;i++){lc[i]-=m;}; return m;}
friend ostream& operator<<(ostream&o,lcurve&l){ o << setprecision(12);
for(int i=0;i<l.len;i++){o << l.t[i] << " " << l.lc[i] << " " << l.lce[i] << endl;}
return(o);}

58
src/inc/lag_rms.hpp Normal file
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@ -0,0 +1,58 @@
/*
* lag.hpp
*
* Created on: Jun 1, 2013
* Author: azoghbi
*/
#ifndef LAG_RMS_HPP_
#define LAG_RMS_HPP_
#include "mod.hpp"
class lag_rms : public mod {
int n1;
vec p1,p2;
ivec icx,iphi;
double mean1,mean2,mean1sq,mean2sq,mean12;
void _C( vec );
void _dC( vec , int );
void _dCx( vec , int );
void _dPhi( vec , int );
public:
lag_rms( lcurve , lcurve , vec , vec );
virtual ~lag_rms();
void step_pars( int , vec& , vec& );
void print_pars( vec& , vec& );
};
// ----------------------------------- //
class lag10_rms : public mod {
int n1;
vec p1,p2;
ivec icx,iphi;
double mean1,mean2,mean1sq,mean2sq,mean12;
void _C( vec );
void _dC( vec , int );
void _dCx( vec , int );
void _dPhi( vec , int );
public:
lag10_rms( lcurve , lcurve , vec , vec );
virtual ~lag10_rms();
void step_pars( int , vec& , vec& );
void print_pars( vec& , vec& );
void what_pars( int& , int& );
};
#endif /* LAG_HPP_ */

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@ -16,8 +16,11 @@
#include "def.hpp"
#include "psd.hpp"
#include "psd_rms.hpp"
#include "lag.hpp"
#include "lag_rms.hpp"
#include "psdlag.hpp"
#include "psdlag_rms.hpp"
#include "mcmc.hpp"
@ -27,14 +30,28 @@ void readLC( vector<vector<lcurve> >&, string , int , int , int , bool );
double mcmc_lag10( vec& x ,void*ptr ){
int i,np = x.length(); for(i=0;i<np/2;i++){if(x[i]>7){x[i]=7;}if(x[i]<-7){x[i]=-7;}}
Mod<lag10> *mod = (Mod<lag10>*) ptr; double logl=mod->loglikelihood(x);
int i,hnp,np = x.length();hnp=np/2; double phi,twopi=2*M_PI;
for(i=0;i<hnp;i++){
if(x[i]>7){x[i]=7;}if(x[i]<-7){x[i]=-7;}
phi = x[i+hnp]+M_PI;
while(phi>twopi){phi -= twopi;}
while(phi<0){phi += twopi;}
x[i+hnp] = phi-M_PI;
}
Mod<lag10_rms> *mod = (Mod<lag10_rms>*) ptr; double logl=mod->loglikelihood(x);
return logl;
}
double mcmc_psdlag10( vec& x ,void*ptr ){
int i,np = x.length(); for(i=0;i<np/2;i++){if(x[i]>7){x[i]=7;}if(x[i]<-7){x[i]=-7;}}
Mod<psdlag10> *mod = (Mod<psdlag10>*) ptr; double logl=mod->loglikelihood(x);
int i,hnp,np = x.length();hnp=np/2; double phi,twopi=2*M_PI;
for(i=0;i<hnp;i++){
if(x[i]>7){x[i]=7;}if(x[i]<-7){x[i]=-7;}
phi = x[i+hnp]+M_PI;
while(phi>twopi){phi -= twopi;}
while(phi<0){phi += twopi;}
x[i+hnp] = phi-M_PI;
}
Mod<psdlag10_rms> *mod = (Mod<psdlag10_rms>*) ptr; double logl=mod->loglikelihood(x);
return logl;
}

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@ -8,8 +8,8 @@
#ifndef MCMC_HPP_
#define MCMC_HPP_
#include <ap.h>
#include <alglibmisc.h>
#include <alglib/ap.h>
#include <alglib/alglibmisc.h>
#include <fstream>
#include <iostream>
#include <iomanip>

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@ -9,8 +9,8 @@
#define MOD_HPP_
#include "def.hpp"
#include <specialfunctions.h>
#include <solvers.h>
#include <alglib/specialfunctions.h>
#include <alglib/solvers.h>
class mod {
@ -125,7 +125,8 @@ public:
// ---------- //
vector<int> ic,iv; sing = 0;
for( i=0; i <npar ; i++ ){ if( fabs(grad[i]) < 1e-5 ){ sing=1;ic.push_back(i); }else { iv.push_back(i);}}
if( sing == 1 and iv.size()!=0 ){
//if( sing == 1 and iv.size()!=0 ){
if( sing == 1 ){
np = iv.size();
vec g; vec2 h,hi,iii; g.setlength(np); h.setlength(np,np); hi.setlength(np,np);iii.setlength(np,np);
for( i=0 ; i<np ; i++ ){
@ -184,15 +185,19 @@ public:
vec tmppars,dpar,grad,prevp; vec2 hess,hessi,ii;
tmppars.setlength(npar); dpar.setlength(npar); grad.setlength(npar); prevp.setlength(npar);
hess.setlength( npar , npar );ii.setlength(npar,npar);hessi.setlength(npar,npar);
vector<int> ic,iv; np = npar - 1;
vec g; vec2 h,hi,iii; g.setlength(np); h.setlength(np,np); hi.setlength(np,np);iii.setlength(np,np);
ic.push_back(k);
vector<int> ic,iv;
vec g; vec2 h,hi,iii;
dlikelihood( pars , loglike , grad , hess );
if( fabs(grad[k])<1e-5 ) { return loglike;}
for( i=0 ; i<npar ; i++ ){
tmppars[i] = pars[i]; dpar[i] = 0.01*pars[i]; ii(i,i)=1;for(j=0;j<i;j++){ii(i,j)=0;ii(j,i)=0;}
prevp[i] = pars[i];
if(i==k){continue;} iv.push_back(i);
if(i==k or fabs(grad[i])<1e-5 ){ic.push_back(i);}else{ iv.push_back(i); }
}
np = npar - ic.size();
g.setlength(np); h.setlength(np,np); hi.setlength(np,np);iii.setlength(np,np);
for( n=1 ; n<= nmax ; n++ ){
@ -241,8 +246,8 @@ public:
errors( pars , errs2 , -1 );
}
void errors( vec& pars , vec& errs , int sign=-1){
double tol = 1e-3 , delchi = 1;
void errors( vec& pars , vec& errs , int sign=1){
double tol = 1e-2 , delchi = 1;
int i,ip,ip1,ip2;
double pu,pd,phalf=0,bestlike,tmplike,dl;
vec pars0,errs0,tmpp; pars0.setlength(npar);errs0.setlength(npar);tmpp.setlength(npar);
@ -253,6 +258,7 @@ public:
for( ip=ip1 ; ip<ip2 ; ip++ ){
cout << endl << "******* par " << ip << " *******" << endl << endl;
if( errs0[ip]>10 ) { continue ;}
pd = pars[ip];
for( i=0 ;i<npar ; i++ ){tmpp[i] = pars0[i]; }

41
src/inc/psd_rms.hpp Normal file
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@ -0,0 +1,41 @@
/*
* psd.hpp
*
* Created on: May 31, 2013
* Author: azoghbi
*/
#ifndef PSD_RMS_HPP_
#define PSD_RMS_HPP_
#include "mod.hpp"
class psd_rms: public mod {
double mean,mean2;
void _C( vec );
void _dC( vec , int );
public:
psd_rms( lcurve , vec );
virtual ~psd_rms();
};
// ---------------------- //
class psd10_rms: public mod {
double mean,mean2;
void _C( vec );
void _dC( vec , int );
public:
psd10_rms( lcurve , vec );
virtual ~psd10_rms();
void step_pars( int , vec& , vec& );
};
#endif /* PSD_RMS_HPP_ */

56
src/inc/psdlag_rms.hpp Normal file
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@ -0,0 +1,56 @@
/*
* psdlag.hpp
*
* Created on: Jun 1, 2013
* Author: azoghbi
*/
#include "mod.hpp"
#ifndef PSDLAG_RMS_HPP_
#define PSDLAG_RMS_HPP_
class psdlag_rms : public mod {
int n1;
ivec ip1,ip2,icx,iphi;
double mean1,mean2,mean1sq,mean2sq,mean12;
void _C( vec );
void _dC( vec , int );
void _dP1( vec , int );
void _dP2( vec , int );
void _dCx( vec , int );
void _dPhi( vec , int );
public:
psdlag_rms( lcurve , lcurve , vec );
virtual ~psdlag_rms();
void step_pars( int , vec& , vec& );
void print_pars( vec& , vec& );
};
class psdlag10_rms : public mod {
int n1;
ivec ip1,ip2,icx,iphi;
double mean1,mean2,mean1sq,mean2sq,mean12;
void _C( vec );
void _dC( vec , int );
void _dP1( vec , int );
void _dP2( vec , int );
void _dCx( vec , int );
void _dPhi( vec , int );
public:
psdlag10_rms( lcurve , lcurve , vec );
virtual ~psdlag10_rms();
void step_pars( int , vec& , vec& );
void print_pars( vec& , vec& );
void what_pars( int&, int& );
};
#endif /* PSDLAG_RMS_HPP_ */

230
src/lag_rms.cpp Normal file
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@ -0,0 +1,230 @@
/*
* lag.cpp
*
* Created on: Jun 1, 2013
* Author: azoghbi
*/
#include "inc/lag_rms.hpp"
lag_rms::lag_rms( lcurve lc1 , lcurve lc2 , vec fqL , vec pars ) {
// ----------- initial parameters ------------ //
n1 = lc1.len;
n = n1 + lc2.len;
dt = lc1.dt;
// ------------------------------------------ //
// ----------- light curve setup ------------ //
setlc();
mean1 = lc1.demean(); mean2 = lc2.demean();
mean1sq = mean1*mean1; mean2sq = mean2*mean2; mean12 = mean1*mean2;
int i;
for( i=0 ; i<n1 ; i++ ){
lc[i] = lc1.lc[i];
lce[i] = lc1.lce[i]*lc1.lce[i];
t[i] = lc1.t[i];
}
for( i=n1 ; i<n ; i++ ){
lc[i] = lc2.lc[i-n1];
lce[i] = lc2.lce[i-n1]*lc2.lce[i-n1];
t[i] = lc2.t[i-n1];
}
// ------------------------------------------ //
// ----------- parent initilizer ------------ //
init( fqL , 2 );
// ------------------------------------------ //
// --------- constants and indices ---------- //
p1.setlength(nfq); p2.setlength(nfq); icx.setlength(nfq); iphi.setlength(nfq);
for( i=0 ; i<nfq ; i++ ){
p1[i] = pars[i] * mean1sq;
p2[i] = pars[i+nfq] * mean2sq;
icx[i] = i;
iphi[i] = i+nfq;
}
// ------------------------------------------ //
}
lag_rms::~lag_rms() {}
void lag_rms::_C( vec p ){
int i,j,k; double d;
for( i=0 ; i<nfq ; i++ ){ p[icx[i]] *= mean12;}
for( i=0 ; i<n1 ; i++ ){
d = 0; for( k=0 ; k<nfq ; k++ ){ d += p1[k]*Cfq[k](i,i); } d += lce[i]; C(i,i) = d;
for( j=0 ; j<i ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){ d += p1[k]*Cfq[k](i,j); } C(i,j) = d;}
}
for( i=n1 ; i<n ; i++ ){
d = 0; for( k=0 ; k<nfq ; k++ ){ d += p2[k]*Cfq[k](i,i); } d += lce[i]; C(i,i) = d;
for( j=n1 ; j<i ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){ d += p2[k]*Cfq[k](i,j); } C(i,j) = d;}
for( j=0 ; j<n1 ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){
d += p[icx[k]] * ( Cfq[k](i,j)*cos(p[iphi[k]]) - Sfq[k](i,j)*sin(p[iphi[k]])); } C(i,j) = d;}
}
}
void lag_rms::_dC( vec p , int k ){
if( k<nfq ){ _dCx( p , k );
}else{ _dPhi( p , k-nfq );}
}
void lag_rms::_dCx( vec p , int k ){
int i,j; double phi=p[iphi[k]];
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;}
for( j=0 ; j<n1 ; j++ ){
dC(i,j) = ( Cfq[k](i,j)*cos(phi) - Sfq[k](i,j)*sin(phi) ); dC(j,i) = dC(i,j);}
}
}
void lag_rms::_dPhi( vec p , int k ){
int i,j; double cx=p[k]*mean12,phi=p[iphi[k]];
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;}
for( j=0 ; j<n1 ; j++ ){
dC(i,j) = cx * ( -Cfq[k](i,j)*sin(phi) - Sfq[k](i,j)*cos(phi) ); dC(j,i) = dC(i,j);}
}
}
void lag_rms::step_pars( int n , vec& dpar , vec& pars ){
for( int i=0 ; i<npar ; i++ ){
if( dpar[i]>3000 ){dpar[i] = 3000;} if( dpar[i]<-3000 ){dpar[i] = -3000;}
pars[i] += dpar[i]/((n<10)?10:1);
}
}
void lag_rms::print_pars( vec& pars , vec& errs ){
for( int i=0 ; i<nfq ; i++ ){
if( pars[i]<0 ){ pars[i]*=-1; pars[i+nfq] += M_PI;}
while( pars[i+nfq] > M_PI ){ pars[i+nfq] -= 2*M_PI; }
while( pars[i+nfq] <-M_PI ){ pars[i+nfq] += 2*M_PI; }
}
mod::print_pars( pars , errs );
}
// ****************************************** //
lag10_rms::lag10_rms( lcurve lc1 , lcurve lc2 , vec fqL , vec pars ) {
// ----------- initial parameters ------------ //
n1 = lc1.len;
n = n1 + lc2.len;
dt = lc1.dt;
// ------------------------------------------ //
// ----------- light curve setup ------------ //
setlc();
mean1 = lc1.demean(); mean2 = lc2.demean();
mean1sq = mean1*mean1; mean2sq = mean2*mean2; mean12 = mean1*mean2;
int i;
for( i=0 ; i<n1 ; i++ ){
lc[i] = lc1.lc[i];
lce[i] = lc1.lce[i]*lc1.lce[i];
t[i] = lc1.t[i];
}
for( i=n1 ; i<n ; i++ ){
lc[i] = lc2.lc[i-n1];
lce[i] = lc2.lce[i-n1]*lc2.lce[i-n1];
t[i] = lc2.t[i-n1];
}
// ------------------------------------------ //
// ----------- parent initilizer ------------ //
init( fqL , 2 );
// ------------------------------------------ //
// --------- constants and indices ---------- //
p1.setlength(nfq); p2.setlength(nfq); icx.setlength(nfq); iphi.setlength(nfq);
for( i=0 ; i<nfq ; i++ ){
p1[i] = pow(10,pars[i]) * mean1sq;
p2[i] = pow(10,pars[i+nfq]) * mean2sq;
icx[i] = i;
iphi[i] = i+nfq;
}
// ------------------------------------------ //
}
lag10_rms::~lag10_rms() {}
void lag10_rms::_C( vec p ){
int i,j,k; double d; for(i=0;i<nfq;i++){p[icx[i]] = pow(10,p[i]) * mean12;}
for( i=0 ; i<n1 ; i++ ){
d = 0; for( k=0 ; k<nfq ; k++ ){ d += p1[k]*Cfq[k](i,i); }
d += f1*p1[0]*Cfq2[0](i,i) + f2*p1[nfq-1]*Cfq2[2](i,i);
d += lce[i]; C(i,i) = d;
for( j=0 ; j<i ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){ d += p1[k]*Cfq[k](i,j); }
d += f1*p1[0]*Cfq2[0](i,j) + f2*p1[nfq-1]*Cfq2[2](i,j);
C(i,j) = d;}
}
for( i=n1 ; i<n ; i++ ){
d = 0; for( k=0 ; k<nfq ; k++ ){ d += p2[k]*Cfq[k](i,i); }
d += f1*p2[0]*Cfq2[0](i,i) + f2*p2[nfq-1]*Cfq2[2](i,i);
d += lce[i]; C(i,i) = d;
for( j=n1 ; j<i ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){ d += p2[k]*Cfq[k](i,j); }
d += f1*p2[0]*Cfq2[0](i,j) + f2*p2[nfq-1]*Cfq2[2](i,j);
C(i,j) = d;}
for( j=0 ; j<n1 ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){
d += p[icx[k]] * ( Cfq[k](i,j)*cos(p[iphi[k]]) - Sfq[k](i,j)*sin(p[iphi[k]])); }
d += f1*p[icx[0]] * ( Cfq2[0](i,j)*cos(p[iphi[0]]) - Sfq2[0](i,j)*sin(p[iphi[0]]) );
d += f2*p[icx[nfq-1]] * ( Cfq2[2](i,j)*cos(p[iphi[nfq-1]]) - Sfq2[2](i,j)*sin(p[iphi[nfq-1]]) );
C(i,j) = d;}
}
}
void lag10_rms::_dC( vec p , int k ){
if( k<nfq ){ _dCx( p , k );
}else{ _dPhi( p , k-nfq );}
}
void lag10_rms::_dCx( vec p , int k ){
int i,j; double phi=p[iphi[k]],cx = log(10)*pow(10,p[k])*mean12;
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;}
for( j=0 ; j<n1 ; j++ ){
dC(i,j) = cx * ( Cfq[k](i,j)*cos(phi) - Sfq[k](i,j)*sin(phi) ); dC(j,i) = dC(i,j);}
}
}
void lag10_rms::_dPhi( vec p , int k ){
int i,j; double cx=pow(10,p[k])*mean12,phi=p[iphi[k]];
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;}
for( j=0 ; j<n1 ; j++ ){
dC(i,j) = cx * ( -Cfq[k](i,j)*sin(phi) - Sfq[k](i,j)*cos(phi) ); dC(j,i) = dC(i,j);}
}
}
void lag10_rms::step_pars( int n , vec& dpar , vec& pars ){
for( int i=0 ; i<npar ; i++ ){
if( dpar[i]>3 ){dpar[i] = 3;} if( dpar[i]<-3 ){dpar[i] = -3;}
//pars[i] += dpar[i];
pars[i] += dpar[i]/((n<5)?10:1);
}
}
void lag10_rms::print_pars( vec& pars , vec& errs ){
for( int i=0 ; i<nfq ; i++ ){
while( pars[i+nfq] > M_PI ){ pars[i+nfq] -= 2*M_PI; }
while( pars[i+nfq] <-M_PI ){ pars[i+nfq] += 2*M_PI; }
}
mod::print_pars( pars , errs );
}
void lag10_rms::what_pars( int& ip1 , int& ip2 ){
ip1 = nfq; ip2 = npar;
}

View File

@ -35,10 +35,9 @@ int main( int argc , char* argv[] ){
void do_work( char* fname ){
/************ Reading the input file ***********/
ifstream fp(fname);
string line,mcmcfile; stringstream ss;
int i,nfiles,nfq,mode,npar,bin1,bin2,fit_type,nrun,nburn,nwk; bool strict;
string line,mcmcfile,colon; stringstream ss;
int i,nfiles,nfq,mode,npar,bin1,bin2,fit_type,nrun,nburn,nwk,ref; bool strict;
getline(fp,line);ss.str(line); ss >> nfiles; ss.clear();
vector<string> files(nfiles);ivec secL;secL.setlength(nfiles);for(i=0;i<nfiles;i++){
getline(fp,line); ss.str(line); ss >> files[i] >> secL[i]; ss.clear();}
@ -47,7 +46,12 @@ void do_work( char* fname ){
getline(fp,line); ss.str(line); ss >> mode; ss.clear();
npar = (mode==0)?4*nfq:nfq; vec pars; pars.setlength(npar);
getline(fp,line); ss.str(line); for(i=0;i<npar;i++){ss >> pars[i];} ss.clear();
getline(fp,line); ss.str(line); ss >> bin1 >> bin2; ss.clear();
getline(fp,line); ss.str(line); ss >> ref >> colon >> bin2; ss.clear();
if(colon.compare(0,1,":") == 0 ){
bin1 = atoi(colon.substr(1).c_str());
}else{
bin1 = ref; ref = -10; bin2 = atoi(colon.c_str());
}
if(mode!=0){bin1 = (mode==-1)?-1:(mode-1);bin2=-1;}
getline(fp,line); ss.str(line); ss >> fit_type; ss.clear();
getline(fp,line); ss.str(line); ss >> i; strict = i!=0; ss.clear();
@ -56,47 +60,59 @@ void do_work( char* fname ){
/********* END Reading the input file **********/
/********** Read the light curves **************/
vector<vector<lcurve> > LC;
for(i=0;i<nfiles;i++) readLC( LC , files[i] , secL[i] , bin1 , bin2 , strict );
vector<vector<lcurve> > LC,LC_ref;
if ( ref == -10 ){
for(i=0;i<nfiles;i++) readLC( LC , files[i] , secL[i] , bin1 , bin2 , strict );
}else {
for(i=0;i<nfiles;i++) {
if( i!=ref ) { readLC( LC , files[i] , secL[i] , bin2 , -1 , strict ); }
}
readLC( LC_ref , files[ref] , secL[ref] , bin1 , -1 , strict );
}
/******** END Read the light curves ************/
if( mode > 0 or mode==-1 ){
vec errs; errs.setlength(nfq);
vector<lcurve> lc1; for( i=0 ; i<int(LC.size()) ; i++ ){ lc1.push_back( LC[i][0]); }
Mod<psd10> p1( lc1 , fqL );
Mod<psd10_rms> p1( lc1 , fqL );
p1.optimize( pars , errs );
if( fit_type==1 ) p1.errors( pars , errs );
}else if( mode == 0 or mode==-1 ){
}else if( mode == 0 ){
vec ec,e1,e2,errs; ec.setlength(2*nfq);e1.setlength(nfq);e2.setlength(nfq);errs.setlength(4*nfq);
vector<lcurve> lc1,lc2; for( i=0 ; i<int(LC.size()) ; i++ ){ lc1.push_back( LC[i][0]); lc2.push_back( LC[i][1]); }
Mod<psd10> p1( lc1 , fqL ), p2( lc2 , fqL );
vector<lcurve> lc1,lc2;
if( ref==-10 ){ // standard way of getting reference
for( i=0 ; i<int(LC.size()) ; i++ ){ lc1.push_back( LC[i][0]); lc2.push_back( LC[i][1]); }
}else{
for( i=0 ; i<int(LC_ref.size()) ; i++ ){ lc2.push_back( LC[i][0]);}
for( i=0 ; i<int(LC.size()) ; i++ ){ lc1.push_back( LC_ref[i][0]);}
}
Mod<psd10_rms> p1( lc1 , fqL ), p2( lc2 , fqL );
vec pars1,pars2;pars1.setlength(nfq);pars2.setlength(nfq);for(i=0;i<nfq;i++){pars1[i]=pars[i];pars2[i]=pars[i+nfq];}
p1.optimize( pars1 , e1 );
p2.optimize( pars2 , e2 );
if( fit_type==1 ) {
p1.errors_avg( pars1 , e1 );
p2.errors_avg( pars2 , e2 );
p1.errors( pars1 , e1 );
p2.errors( pars2 , e2 );
}
vec pc; pc.setlength(2*nfq);
for(i=0;i<nfq;i++){pc[i]=pars[i+2*nfq];pc[i+nfq]=pars[i+3*nfq];pars[i]=pars1[i];pars[i+nfq]=pars2[i];pc[i]=(pars1[i]+pars2[i])/2;}
Mod<lag10> l( lc1 , lc2 , fqL , pars );
Mod<lag10_rms> l( lc1 , lc2 , fqL , pars );
l.optimize( pc , ec );
if( fit_type==1 ) l.errors_avg( pc , ec );
if( fit_type==1 ) l.errors( pc , ec );
if( fit_type==2 ) {
mcmc mc( 2*nfq , mcmc_lag10 , (void*)&l );
mc.nrun=nrun; mc.nburn=nburn; mc.nwk=nwk;
mc.run( pc , errs , mcmcfile.c_str() );
mc.run( pc , ec , mcmcfile.c_str() );
}
for(i=0;i<nfq;i++){ pars[i+2*nfq]=pc[i]; pars[i+3*nfq]=pc[i+nfq];}
for(i=0;i<nfq;i++){ errs[i] = e1[i]; errs[i+nfq] = e2[i]; errs[i+2*nfq]=ec[i]; errs[i+3*nfq]=ec[i+nfq];}
Mod<psdlag10> pl( lc1 , lc2 , fqL );
if( fit_type==3 ) pl.errors_avg( pars , errs );
Mod<psdlag10_rms> pl( lc1 , lc2 , fqL );
if( fit_type==3 ) pl.errors( pars , errs );
if( fit_type==4 ) {
mcmc mc( 4*nfq , mcmc_psdlag10 , (void*)&pl );
mc.nrun=nrun; mc.nburn=nburn; mc.nwk=nwk;
@ -161,6 +177,7 @@ void readLC( vector<vector<lcurve> >&LC , string fname , int secL , int b1 , int
/* Initialize file stream, define some variables */
ifstream fp(fname.c_str()); string line,sdum; stringstream ss;
int i,j,nlc,n,nsec,ns,sl; double dt;
/* read dt from the description line */
getline(fp,line); ss.str(line); ss >> sdum >> dt >> nlc; ss.clear();

View File

@ -1,8 +1,13 @@
incdir='/home/caes/science/psdlag-agn/src/'
#incdir='/Users/othoulrich/science/psdlag-agn/src'
# original
#libdir='/eos/azoghbi/soft/usr/lib'
#incdir='/eos/azoghbi/soft/usr/include'
# most systems
#libdir='/home/caes/science/psdlag-agn/src/inc'
#incdir='/home/caes/science/psdlag-agn/src/inc'
# thor
libdir='/home/research/xaw5719/psdlag-agn/src/inc'
alglibdir='/home/research/xaw5719/psdlag-agn/src/inc/alglib'
incdir='/home/research/xaw5719/psdlag-agn/src/inc'
psdlag:
g++ *cpp -o psdlag -O3 -Wall -I${incdir}
g++ *cpp inc/alglib/*cpp -o psdlag -O3 -Wall -I${incdir} -L${libdir} -L${alglibdir} -I${alglibdir}

View File

@ -32,7 +32,8 @@ void mod::init( vec fqL , int fac ){
Cfq2.resize( 3 );Sfq2.resize( 3 );
for( i=0 ; i<3 ; i++ ){ Cfq2[i].setlength( n , n ); Sfq2[i].setlength( n , n );}
vec fqL2;fqL2.setlength(4); fqL2[0] = 1e-1*fqL[0]; fqL2[1] = fqL[0]; fqL2[2] = fqL[nfq]; fqL2[3] = 10*fqL[nfq];
f1 = 2; f2 = 0.5;
//f1 = 1.5; f2 = 0.6;
f1 = 0.5; f2 = .0;
_CSfq( fqL2 , Cfq2 , Sfq2 );
// ------------------------------------------ //

108
src/psd_rms.cpp Normal file
View File

@ -0,0 +1,108 @@
/*
* psd.cpp
*
* Created on: May 31, 2013
* Author: azoghbi
*/
#include "inc/psd_rms.hpp"
psd_rms::psd_rms( lcurve inlc , vec fqL ) {
// ----------- initial parameters ------------ //
n = inlc.len;
dt = inlc.dt;
// ------------------------------------------ //
// ----------- light curve setup ------------ //
setlc();
mean = inlc.demean();
mean2 = mean*mean;
int i;
for( i=0 ; i<n ; i++ ){
lc[i] = inlc.lc[i];
lce[i] = inlc.lce[i]*inlc.lce[i];
t[i] = inlc.t[i];
}
// ------------------------------------------ //
// ----------- parent initilizer ------------ //
init( fqL , 1 );
// ------------------------------------------ //
}
psd_rms::~psd_rms() {}
void psd_rms::_C( vec p ){
int i,j,k; double d;
for( i=0 ; i<npar ; i++ ){ p[i] *= mean2; }
for( i=0 ; i<n ; i++ ){
d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[k]*Cfq[k](i,i); }
d += f1*p[0]*Cfq2[0](i,i) + f2*p[nfq-1]*Cfq2[2](i,i);
d += lce[i]; C(i,i) = d;
for( j=0 ; j<i ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[k]*Cfq[k](i,j); }
d += f1*p[0]*Cfq2[0](i,j) + f2*p[nfq-1]*Cfq2[2](i,j);
C(i,j) = d;}
}
}
void psd_rms::_dC( vec p , int k ){
int i,j;
for( i=0 ; i<n ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = Cfq[k](i,j); dC(j,i) = dC(i,j);} }
}
// ********************************************** //
// ********************************************** //
psd10_rms::psd10_rms( lcurve inlc , vec fqL ) {
// ----------- initial parameters ------------ //
n = inlc.len;
dt = inlc.dt;
// ------------------------------------------ //
// ----------- light curve setup ------------ //
setlc();
mean = inlc.demean();
mean2 = mean*mean;
int i;
for( i=0 ; i<n ; i++ ){
lc[i] = inlc.lc[i];
lce[i] = inlc.lce[i]*inlc.lce[i];
t[i] = inlc.t[i];
}
// ------------------------------------------ //
// ----------- parent initilizer ------------ //
init( fqL , 1 );
// ------------------------------------------ //
}
psd10_rms::~psd10_rms() {}
void psd10_rms::_C( vec p ){
int i,j,k; double d; for(i=0;i<npar;i++){p[i]=pow(10,p[i])*mean2;}
for( i=0 ; i<n ; i++ ){
d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[k]*Cfq[k](i,i); }
d += f1*p[0]*Cfq2[0](i,i) + f2*p[nfq-1]*Cfq2[2](i,i);
d += lce[i]; C(i,i) = d;
for( j=0 ; j<i ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[k]*Cfq[k](i,j); }
d += f1*p[0]*Cfq2[0](i,j) + f2*p[nfq-1]*Cfq2[2](i,j);
C(i,j) = d;}
}
}
void psd10_rms::_dC( vec p , int k ){
int i,j; double d = log(10)*pow(10,p[k])*mean2;
for( i=0 ; i<n ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = d*Cfq[k](i,j); dC(j,i) = dC(i,j);} }
}
void psd10_rms::step_pars( int n , vec& dpar , vec& pars ){
for( int i=0 ; i<npar ; i++ ){
if( dpar[i]>3 ){dpar[i] = 3;} if( dpar[i]<-3 ){dpar[i] = -3;}
pars[i] += dpar[i];
}
}

255
src/psdlag_rms.cpp Normal file
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@ -0,0 +1,255 @@
/*
* psdlag.cpp
*
* Created on: Jun 1, 2013
* Author: azoghbi
*/
#include "inc/psdlag_rms.hpp"
psdlag_rms::psdlag_rms( lcurve lc1, lcurve lc2 , vec fqL ) {
// ----------- initial parameters ------------ //
n1 = lc1.len;
n = n1 + lc2.len;
dt = lc1.dt;
// ------------------------------------------ //
// ----------- light curve setup ------------ //
setlc();
mean1 = lc1.demean(); mean2 = lc2.demean();
mean1sq = mean1*mean1; mean2sq = mean2*mean2; mean12 = mean1*mean2;
int i;
for( i=0 ; i<n1 ; i++ ){
lc[i] = lc1.lc[i];
lce[i] = lc1.lce[i]*lc1.lce[i];
t[i] = lc1.t[i];
}
for( i=n1 ; i<n ; i++ ){
lc[i] = lc2.lc[i-n1];
lce[i] = lc2.lce[i-n1]*lc2.lce[i-n1];
t[i] = lc2.t[i-n1];
}
// ------------------------------------------ //
// ----------- parent initilizer ------------ //
init( fqL , 4 );
// ------------------------------------------ //
// --------- constants and indices ---------- //
ip1.setlength(nfq); ip2.setlength(nfq); icx.setlength(nfq); iphi.setlength(nfq);
for( i=0 ; i<nfq ; i++ ){
ip1[i] = i;
ip2[i] = i+nfq;
icx[i] = i+2*nfq;
iphi[i] = i+3*nfq;
}
// ------------------------------------------ //
}
psdlag_rms::~psdlag_rms() {}
void psdlag_rms::_C( vec p ){
int i,j,k; double d;
for( i=0 ; i<nfq ; i++ ){ p[ip1[i]] *= mean1sq; p[ip2[i]] *= mean2sq; p[icx[i]] *= mean12;}
for( i=0 ; i<n1 ; i++ ){
d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[ip1[k]]*Cfq[k](i,i); } d += lce[i]; C(i,i) = d;
for( j=0 ; j<i ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[ip1[k]]*Cfq[k](i,j); } C(i,j) = d;}
}
for( i=n1 ; i<n ; i++ ){
d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[ip2[k]]*Cfq[k](i,i); } d += lce[i]; C(i,i) = d;
for( j=n1 ; j<i ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[ip2[k]]*Cfq[k](i,j); } C(i,j) = d;}
for( j=0 ; j<n1 ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){
d += p[icx[k]] * ( Cfq[k](i,j)*cos(p[iphi[k]]) - Sfq[k](i,j)*sin(p[iphi[k]])); } C(i,j) = d;}
}
}
void psdlag_rms::_dC( vec p , int k ){
if( k<nfq ){ _dP1( p , k );
}else if( k<2*nfq ){ _dP2( p , k%nfq );
}else if( k<3*nfq ){ _dCx( p , k%nfq );
}else{ _dPhi( p , k%nfq );}
}
void psdlag_rms::_dP1( vec p , int k ){
int i,j;
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = Cfq[k](i,j); dC(j,i) = dC(i,j);} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;}
for( j=0 ; j<n1 ; j++ ){ dC(i,j) = 0; dC(j,i) = dC(i,j);}
}
}
void psdlag_rms::_dP2( vec p , int k ){
int i,j;
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = dC(i,j);} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = Cfq[k](i,j); dC(j,i) = dC(i,j);}
for( j=0 ; j<n1 ; j++ ){ dC(i,j) = 0; dC(j,i) = dC(i,j);}
}
}
void psdlag_rms::_dCx( vec p , int k ){
int i,j; double phi=p[iphi[k]];
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;}
for( j=0 ; j<n1 ; j++ ){
dC(i,j) = ( Cfq[k](i,j)*cos(phi) - Sfq[k](i,j)*sin(phi) ); dC(j,i) = dC(i,j);}
}
}
void psdlag_rms::_dPhi( vec p , int k ){
int i,j; double cx=p[icx[k]]*mean12,phi=p[iphi[k]];
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;}
for( j=0 ; j<n1 ; j++ ){
dC(i,j) = cx * ( -Cfq[k](i,j)*sin(phi) - Sfq[k](i,j)*cos(phi) ); dC(j,i) = dC(i,j);}
}
}
void psdlag_rms::step_pars( int n , vec& dpar , vec& pars ){
for( int i=0 ; i<npar ; i++ ){
if( dpar[i]>3000 ){dpar[i] = 3000;} if( dpar[i]<-3000 ){dpar[i] = -3000;}
pars[i] += dpar[i]/((n<10)?10:1);
}
}
void psdlag_rms::print_pars( vec& pars , vec& errs ){
for( int i=0 ; i<nfq ; i++ ){
if( pars[i+2*nfq]<0 ){ pars[i+2*nfq]*=-1; pars[i+3*nfq] += M_PI;}
while( pars[i+3*nfq] > M_PI ){ pars[i+3*nfq] -= 2*M_PI; }
while( pars[i+3*nfq] <-M_PI ){ pars[i+3*nfq] += 2*M_PI; }
mod::print_pars( pars , errs );
}
}
// ++++++++++++++++++++++++++++++++++++++++++++++++++++++ //
psdlag10_rms::psdlag10_rms( lcurve lc1, lcurve lc2 , vec fqL ) {
// ----------- initial parameters ------------ //
n1 = lc1.len;
n = n1 + lc2.len;
dt = lc1.dt;
// ------------------------------------------ //
// ----------- light curve setup ------------ //
setlc();
mean1 = lc1.demean(); mean2 = lc2.demean();
mean1sq = mean1*mean1; mean2sq = mean2*mean2; mean12 = mean1*mean2;
int i;
for( i=0 ; i<n1 ; i++ ){
lc[i] = lc1.lc[i];
lce[i] = lc1.lce[i]*lc1.lce[i];
t[i] = lc1.t[i];
}
for( i=n1 ; i<n ; i++ ){
lc[i] = lc2.lc[i-n1];
lce[i] = lc2.lce[i-n1]*lc2.lce[i-n1];
t[i] = lc2.t[i-n1];
}
// ------------------------------------------ //
// ----------- parent initilizer ------------ //
init( fqL , 4 );
// ------------------------------------------ //
// --------- constants and indices ---------- //
ip1.setlength(nfq); ip2.setlength(nfq); icx.setlength(nfq); iphi.setlength(nfq);
for( i=0 ; i<nfq ; i++ ){
ip1[i] = i;
ip2[i] = i+nfq;
icx[i] = i+2*nfq;
iphi[i] = i+3*nfq;
}
// ------------------------------------------ //
}
psdlag10_rms::~psdlag10_rms() {}
void psdlag10_rms::_C( vec p ){
int i,j,k; double d; for(i=0;i<nfq;i++){ p[ip1[i]] = pow(10,p[ip1[i]])*mean1sq; p[ip2[i]] = pow(10,p[ip2[i]])*mean2sq; p[icx[i]] = pow(10,p[icx[i]])*mean12;}
for( i=0 ; i<n1 ; i++ ){
d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[ip1[k]]*Cfq[k](i,i); } d += lce[i]; C(i,i) = d;
for( j=0 ; j<i ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[ip1[k]]*Cfq[k](i,j); } C(i,j) = d;}
}
for( i=n1 ; i<n ; i++ ){
d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[ip2[k]]*Cfq[k](i,i); } d += lce[i]; C(i,i) = d;
for( j=n1 ; j<i ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){ d += p[ip2[k]]*Cfq[k](i,j); } C(i,j) = d;}
for( j=0 ; j<n1 ; j++ ){ d = 0; for( k=0 ; k<nfq ; k++ ){
d += p[icx[k]] * ( Cfq[k](i,j)*cos(p[iphi[k]]) - Sfq[k](i,j)*sin(p[iphi[k]])); } C(i,j) = d;}
}
}
void psdlag10_rms::_dC( vec p , int k ){
if( k<nfq ){ _dP1( p , k );
}else if( k<2*nfq ){ _dP2( p , k%nfq );
}else if( k<3*nfq ){ _dCx( p , k%nfq );
}else{ _dPhi( p , k%nfq );}
}
void psdlag10_rms::_dP1( vec p , int k ){
int i,j; double p1 = log(10)*pow(10,p[k])*mean1sq;
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = p1 * Cfq[k](i,j); dC(j,i) = dC(i,j);} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;}
for( j=0 ; j<n1 ; j++ ){ dC(i,j) = 0; dC(j,i) = dC(i,j);}
}
}
void psdlag10_rms::_dP2( vec p , int k ){
int i,j; double p2 = log(10) * pow(10,p[ip2[k]])*mean2sq;
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = dC(i,j);} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = p2 * Cfq[k](i,j); dC(j,i) = dC(i,j);}
for( j=0 ; j<n1 ; j++ ){ dC(i,j) = 0; dC(j,i) = dC(i,j);}
}
}
void psdlag10_rms::_dCx( vec p , int k ){
int i,j; double phi=p[iphi[k]], cx=log(10)*pow(10,p[icx[k]])*mean12;
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;}
for( j=0 ; j<n1 ; j++ ){
dC(i,j) = cx * ( Cfq[k](i,j)*cos(phi) - Sfq[k](i,j)*sin(phi) ); dC(j,i) = dC(i,j);}
}
}
void psdlag10_rms::_dPhi( vec p , int k ){
int i,j; double cx=pow(10,p[icx[k]])*mean12,phi=p[iphi[k]];
for( i=0 ; i<n1 ; i++ ){ for( j=0 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;} }
for( i=n1 ; i<n ; i++ ){
for( j=n1 ; j<=i ; j++ ){ dC(i,j) = 0; dC(j,i) = 0;}
for( j=0 ; j<n1 ; j++ ){
dC(i,j) = cx * ( -Cfq[k](i,j)*sin(phi) - Sfq[k](i,j)*cos(phi) ); dC(j,i) = dC(i,j);}
}
}
void psdlag10_rms::step_pars( int n , vec& dpar , vec& pars ){
for( int i=0 ; i<npar ; i++ ){
if( dpar[i]>3 ){dpar[i] = 3;} if( dpar[i]<-3 ){dpar[i] = -3;}
//pars[i] += dpar[i];
pars[i] += dpar[i]/((n<5)?10:1);
}
}
void psdlag10_rms::print_pars( vec& pars , vec& errs ){
for( int i=0 ; i<nfq ; i++ ){
while( pars[i+3*nfq] > M_PI ){ pars[i+3*nfq] -= 2*M_PI; }
while( pars[i+3*nfq] <-M_PI ){ pars[i+3*nfq] += 2*M_PI; }
}
mod::print_pars( pars , errs );
}
void psdlag10_rms::what_pars( int& ip1 , int& ip2 ){
ip1 = 3*nfq; ip2 = 4*nfq;
}