From bf4dc5476d040b731150fb8b0ac6ac879aae37a1 Mon Sep 17 00:00:00 2001
From: othocaeS <xaw5719@wmich.edu>
Date: Mon, 25 Jul 2016 17:31:12 -0400
Subject: [PATCH] debugging thor stuff in analysis scripts

---
 scripts/analyze_lightcurves.sh | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/scripts/analyze_lightcurves.sh b/scripts/analyze_lightcurves.sh
index ae1adaa..65990ea 100755
--- a/scripts/analyze_lightcurves.sh
+++ b/scripts/analyze_lightcurves.sh
@@ -23,6 +23,8 @@ then
     echo "─────────────────────────────" >> thor/submissions
 fi
 
+mkdir -p analyses
+
 echo Using lightcurves in $lc_dir.
 
 for echo_curve in $lc_dir/*
@@ -115,9 +117,9 @@ do
             submitscript="thor/${echo_band}.pbs"
             cp tmp.psdlagargs $argsfile
             cat scripts/templates/thor_submit.pbs|
-                sed "s@%ARGSFILE%@${argsfile}@"|
-                sed "s@%ROOTDIR%@$(pwd)@"|
-                sed "s@%OUTPUTFILE%@${outputfile}@" > $submitscript
+                sed "s@%ARGSFILE%@${argsfile}@g"|
+                sed "s@%ROOTDIR%@$(pwd)@g"|
+                sed "s@%OUTPUTFILE%@${outputfile}@g" > $submitscript
             cd thor
             qsub $submitscript >> submissions
             cd ..