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reversed the analysis filename conventions to be "ref band precedes echo band"
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@ -1,14 +1,13 @@
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#!/usr/bin/env bash
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timestep="0.1"
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lc_dir="data/STORM_III/lightcurves/Δt＝${timestep}"
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ref_band='HST(𝛌＝1367Å)'
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# Parameters for HST(𝛌＝1367Å) from MC results
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refpsd_params="6.533e-02 -9.694e-02 -1.175e+00 -1.525e+00 -2.166e+00 -2.492e+00 -3.258e+00 -9.328e+00"
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# Parameters for HST(𝛌＝1367Å) from covariance matrix estimates
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#refpsd_params="7.376e-02 -1.976e-01 -1.182e+00 -1.521e+00 -2.144e+00 -2.503e+00 -3.580e+00 -1.233e+01"
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ref_curve="${lc_dir}/${ref_band}.lc"
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error_type="2"
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# error types:
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# 0 for covariance matrix, 1 for likelihood function, 2 for monte carlo
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@ -18,6 +17,8 @@ case $error_type in
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"2") err_src="MC";;
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esac
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mkdir -p analyses
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if [[ $1 == "thor" ]]
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then
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echo Setting up Thor environment.
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@ -28,16 +29,16 @@ then
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echo "─────────────────────────────" >> thor/submissions
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fi
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mkdir -p analyses
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lc_dir="data/STORM_III/lightcurves/Δt＝${timestep}"
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echo Using lightcurves in $lc_dir.
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ref_curve="${lc_dir}/${ref_band}.lc"
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for echo_curve in $lc_dir/*
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do
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# Determine band and inputs for band
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echo_band=$(basename $echo_curve|sed 's@\(.*\)\.lc@\1@')
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echo -n $(date "+%R")\: Running psdlag for $echo_band against $ref_band.
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outputfile="analyses/${echo_band}_≻_${ref_band}_Δt＝${timestep}_σ∊${err_src}"
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outputfile="analyses/${ref_band}_≺_${echo_band}_Δt＝${timestep}_σ∊${err_src}"
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case $echo_band in
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"g(𝛌＝4775Å)")
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initial_params="$refpsd_params -9.745e-01 -1.384e+00 -2.748e+00 -3.305e+00 -3.314e+00 -3.389e+00 -4.198e+00 -4.465e+00 -4.700e-01 -7.487e-01 -2.046e+00 -2.428e+00 -2.953e+00 -3.086e+00 -3.761e+00 -4.290e+00 9.862e-02 3.899e-01 8.650e-01 5.516e-01 2.228e-01 9.508e-01 -2.872e-01 9.059e-02"
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@ -119,19 +120,19 @@ do
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if [[ $1 == "thor" ]]
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then
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echo_band_noUTF=$(echo $echo_band|
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sed 's@𝛌@@g'|
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sed 's@(@_@g'|
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sed 's@)@_@g'|
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sed 's@＝@@g'|
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sed 's@Å@A@g')
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sed 's|𝛌||g'|
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sed 's|(|_|g'|
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sed 's|)|_|g'|
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sed 's|＝||g'|
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sed 's|Å|A|g')
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outputfile_noUTF=$(echo $outputfile|
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sed 's@𝛌@@g'|
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sed 's@(@_@g'|
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sed 's@)@_@g'|
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sed 's@＝@@g'|
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sed 's@Å@A@g'|
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sed 's@≻@_@g'|
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sed 's@σ∊@err@')
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sed 's|𝛌||g'|
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sed 's|(|_|g'|
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sed 's|)|_|g'|
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sed 's|＝||g'|
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sed 's|Å|A|g'|
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sed 's|≺|_|g'|
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sed 's|σ∊|err|')
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argsfile="thor/arguments/$echo_band_noUTF.args"
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submitscript="thor/${echo_band_noUTF}.pbs"
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cp tmp.psdlagargs $argsfile
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@ -22,18 +22,18 @@ mkdir -p analyses/plots
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for analysis in analyses/*
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do
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# Grab and determine labels of analyses, skip if over the same band.
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ref_band=$(basename $analysis|sed 's@[^≻]*_≻_\([^≻_]*\)_[^_]*_[^_]*@\1@')
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echo_band=$(basename $analysis|sed 's@\([^≻]*\)_≻_[^≻_]*_[^_]*_[^_]*@\1@')
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ref_band=$(basename $analysis|sed 's@\([^≺]*\)_≺_[^≺_]*_[^_]*_[^_]*@\1@')
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echo_band=$(basename $analysis|sed 's@[^≺]*_≺_\([^≺_]*\)_[^_]*_[^_]*@\1@')
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if [[ $ref_band == $echo_band ]]; then continue; fi
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err_type=$(basename $analysis|sed 's@[^≻]*_≻_[^≻_]*_[^_]*_\(σ∊[CLM][MFC]\)@\1@')
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err_type=$(basename $analysis|sed 's@[^≺]*_≺_[^≺_]*_[^_]*_\(σ∊[CLM][MFC]\)@\1@')
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# Prepare files
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echo "Plotting PSD and time lags for $echo_band, referred to ${ref_band}."
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echoPSD_tabfile=analyses/tables/${echo_band}_${err_type}_PSD.tab
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refPSD_tabfile=analyses/tables/${ref_band}_${err_type}_PSD.tab
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timelag_tabfile=analyses/tables/${echo_band}_≻_${ref_band}_${err_type}_timelag.tab
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PSD_plotfile=analyses/plots/${echo_band}_≻_${ref_band}_${err_type}_PSD.png
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timelag_plotfile=analyses/plots/${echo_band}_≻_${ref_band}_${err_type}_timelag.png
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timelag_tabfile=analyses/tables/${ref_band}_≺_${echo_band}_${err_type}_timelag.tab
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PSD_plotfile=analyses/plots/${ref_band}_≺_${echo_band}_${err_type}_PSD.png
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timelag_plotfile=analyses/plots/${ref_band}_≺_${echo_band}_${err_type}_timelag.png
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# Output curves to temporary files using perl script, move tables to
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# permanent location. This just assumes there are no conflicts.
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@ -47,27 +47,26 @@ do
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# read ymin ymax <<< $(ywindow_of $timelag_tabfile)
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# echo $ymin $ymax
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cat scripts/templates/psd_freq.gp|
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sed "s@%TITLE@Power Spectrum for Lightcurves $echo_band and $ref_band@"|
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sed "s@%SUBTITLE@as reported by Fausnaugh et. al, STORM III, 2016@"|
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sed "s@%FILE1@$refPSD_tabfile@"|
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sed "s@%LABEL1@${ref_band} PSD@"|
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sed "s@%FILE2@$echoPSD_tabfile@"|
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sed "s@%LABEL2@${echo_band} PSD@"|
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sed "s@%YMIN@$ymin@"|sed "s@%YMAX@$ymax@"|
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sed "s@%OUTPUTFILE@$PSD_plotfile@" > tmp.gp
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sed "s|%TITLE|Power Spectrum for Lightcurves $echo_band and $ref_band|"|
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sed "s|%SUBTITLE|as reported by Fausnaugh et. al, STORM III, 2016|"|
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sed "s|%FILE1|$refPSD_tabfile|"|
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sed "s|%LABEL1|${ref_band} PSD|"|
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sed "s|%FILE2|$echoPSD_tabfile|"|
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sed "s|%LABEL2|${echo_band} PSD|"|
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sed "s|%YMIN|$ymin|"|sed "s|%YMAX|$ymax|"|
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sed "s|%OUTPUTFILE|$PSD_plotfile|" > tmp.gp
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gnuplot tmp.gp
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# Plot time lags and save using gnuplot
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# read ymin ymax <<< $(ywindow_of $timelag_tabfile)
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cat scripts/templates/timelag_freq.gp|
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sed "s@%TITLE@Time Lag for Lightcurve $echo_band relative to $ref_band@"|
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sed "s@%SUBTITLE@as reported by Fausnaugh et. al, STORM III, 2016@"|
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sed "s@%FILE1@$timelag_tabfile@"|
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sed "s@%LABEL1@${echo_band} Lag@"|
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sed "s@%YMIN@$ymin@"|sed "s@%YMAX@$ymax@"|
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sed "s@%OUTPUTFILE@$timelag_plotfile@" > tmp.gp
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sed "s|%TITLE|Time Lag for Lightcurve $echo_band relative to $ref_band|"|
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sed "s|%SUBTITLE|as reported by Fausnaugh et. al, STORM III, 2016|"|
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sed "s|%FILE1|$timelag_tabfile|"|
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sed "s|%LABEL1|${echo_band} Lag|"|
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sed "s|%YMIN|$ymin|"|sed "s|%YMAX|$ymax|"|
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sed "s|%OUTPUTFILE|$timelag_plotfile|" > tmp.gp
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gnuplot tmp.gp
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done
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rm tmp.*
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@ -6,7 +6,7 @@ do
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new_name=$(basename $analysis|
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sed 's|A_|Å\)|g'|
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sed 's|_\([0-9]\+\)|\(𝛌＝\1|g'|
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sed 's|_|_≻_|'|
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sed 's|_|_≺_|'|
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sed 's|Δt|Δt＝|'|
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sed 's|err|σ∊|')_σ∊MC
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mv $analysis analyses/$new_name
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@ -5,7 +5,7 @@ set output "%OUTPUTFILE"
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set title "%TITLE\n{/*0.7 %SUBTITLE}"
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set xlabel "Temporal Frequency [days^{-1}]"
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set xrange [0.005:0.603]
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set xrange [0.005:0.620]
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# Use this if you want to show PSD directly on a log axis
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# set logscale xy
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@ -4,7 +4,7 @@ set output "%OUTPUTFILE"
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set title "%TITLE\n{/*0.7 %SUBTITLE}"
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set xlabel "Temporal Frequency [days^{-1}]"
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set xrange [0.005:0.603]
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set xrange [0.005:0.620]
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set logscale x
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set ylabel "Lag [days]"
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