added scripts for plotting a comparison between error fit types and for changing the analysis filenames to the ref->band order

scripts/fix_swapped_names.sh

@@ -0,0 +1,13 @@
+#!/usr/bin/env bash
+
+for analysis in analyses/*
+do
+    # Grab and determine labels of analyses
+    ref_band=$(basename $analysis|sed 's|[^≻]*_≻_\([^≻_]*\)_[^_]*_[^_]*|\1|')
+    echo_band=$(basename $analysis|sed 's|\([^≻]*\)_≻_[^≻_]*_[^_]*_[^_]*|\1|')
+    timestep_str=$(basename $analysis|sed 's|[^≻]*_≻_[^≻_]*_\([^_]*\)_σ∊[CLM][MFC]|\1|')
+    err_str=$(basename $analysis|sed 's|[^≻]*_≻_[^≻_]*_[^_]*_\(σ∊[CLM][MFC]\)|\1|')
+
+    newname="${ref_band}_≺_${echo_band}_${timestep_str}_${err_str}"
+    mv $analysis analyses/$newname
+done

scripts/plot_MC_against_CM.sh

@@ -0,0 +1,37 @@
+for table in analyses/tables/*_σ∊MC_timelag*
+do
+    ref_band=$(basename $table|sed 's|\([^≺]*\)_≺_[^≺_]*_[^_]*_[^_]*\.tab|\1|')
+    echo_band=$(basename $table|sed 's|[^≺]*_≺_\([^≺_]*\)_[^_]*_[^_]*\.tab|\1|')
+    if [[ $ref_band == $echo_band ]]; then continue; fi
+    err_str=$(basename $table|sed 's|[^≺]*_≺_[^≺_]*_\(σ∊[CLM][MFC]\)\_[^_]*.tab|\1|')
+
+    CMtable=$(echo $table|sed 's|∊MC|∊CM|')
+
+    plotfile=analyses/plots/${echo_band}_error_compare.png
+
+    echo_band_noUTF=$(echo $echo_band|
+        sed 's|𝛌|λ|g'|
+        #sed 's|(|_|g'|
+        #sed 's|)|_|g'|
+        sed 's|＝|=|g'|
+        sed 's|Å|A|g')
+
+    ref_band_noUTF=$(echo $ref_band|
+        sed 's|𝛌|λ|g'|
+        #sed 's|(|_|g'|
+        #sed 's|)|_|g'|
+        sed 's|＝|=|g'|
+        sed 's|Å|A|g')
+
+    cat scripts/templates/timelag_compare.gp|
+        sed "s|%TITLE|Error Fit Comparison for Time Lag of $echo_band_noUTF|"|
+        sed "s|%SUBTITLE|referred to ${ref_band_noUTF}, as reported by Fausnaugh et. al, STORM III, 2016|"|
+        sed "s|%FILE1|$table|"|
+        sed "s|%LABEL1|${echo_band_noUTF} with Monte Carlo Fit|"|
+        sed "s|%FILE2|$CMtable|"|
+        sed "s|%LABEL2|${echo_band_noUTF} with Covariance Matrix Fit|"|
+        sed "s|%YMIN|$ymin|"|sed "s|%YMAX|$ymax|"|
+        sed "s|%OUTPUTFILE|$plotfile|" > tmp.gp
+    gnuplot tmp.gp
+
+done