From 7f442b9f2b3a57cbacd226ca9ac266c2188ef3d6 Mon Sep 17 00:00:00 2001
From: caes <xaw5719@wmich.edu>
Date: Tue, 12 Jul 2016 23:37:24 -0400
Subject: [PATCH] some plots are now being output, need sleep then debug

---
 scripts/create_plots.sh           | 13 +++++--------
 scripts/templates/timelag_freq.gp |  4 +---
 2 files changed, 6 insertions(+), 11 deletions(-)

diff --git a/scripts/create_plots.sh b/scripts/create_plots.sh
index fe5c8bb..c0b5618 100755
--- a/scripts/create_plots.sh
+++ b/scripts/create_plots.sh
@@ -13,8 +13,8 @@ do
 
     # Prepare files
     echo "Plotting PSD and time lags for $echo_band, referred to ${ref_band}."
-    echoPSD_tabfile=analyses/tables/${echo_band}PSD.tab
-    refPSD_tabfile=analyses/tables/${ref_band}PSD.tab
+    echoPSD_tabfile=analyses/tables/${echo_band}_PSD.tab
+    refPSD_tabfile=analyses/tables/${ref_band}_PSD.tab
     timelag_tabfile=analyses/tables/${echo_band}_≻_${ref_band}_delay.tab
     PSD_plotfile=analyses/plots/${echo_band}_≻_${ref_band}_PSD.png
     timelag_plotfile=analyses/plots/${echo_band}_≻_${ref_band}_timelag.png
@@ -32,18 +32,15 @@ do
         sed "s@%SUBTITLE@as reported by Fausnaugh et. al, STORM III, 2016@"|
         sed "s@%FILE1@$refPSD_tabfile@"|
         sed "s@%FILE2@$echoPSD_tabfile@"|
-        sed "s@%OUTPUTFILE@$PSD_plotfile@" >
-            tmp.gp
+        sed "s@%OUTPUTFILE@$PSD_plotfile@" > tmp.gp
     gnuplot tmp.gp
 
     # Plot time lags and save using gnuplot
     cat scripts/templates/timelag_freq.gp|
         sed "s@%TITLE@Time Lag for Lightcurve $echo_band relative to $ref_band@"|
         sed "s@%SUBTITLE@as reported by Fausnaugh et. al, STORM III, 2016@"|
-        sed "s@%FILE1@$refPSD_tabfile@"|
-        sed "s@%FILE2@$echoPSD_tabfile@"|
-        sed "s@%OUTPUTFILE@$PSD_plotfile@" >
-            tmp.gp
+        sed "s@%FILE1@$timelag_tabfile@"|
+        sed "s@%OUTPUTFILE@$timelag_plotfile@" > tmp.gp
     gnuplot tmp.gp
 done
 
diff --git a/scripts/templates/timelag_freq.gp b/scripts/templates/timelag_freq.gp
index 4bf1084..bdf5b3f 100644
--- a/scripts/templates/timelag_freq.gp
+++ b/scripts/templates/timelag_freq.gp
@@ -3,9 +3,7 @@ set termoption dash
 set output "%OUTPUTFILE"
 
 
-plot 'tables/timelag_lc1.dat' using 1:2:3:4 with xyerrorbars, \
-'tables/timelag_lc2.dat' using 1:2:3:4 with xyerrorbars
+plot '%FILE1' using 1:2:3:4 with xyerrorbars\
 set logscale x
 set xrange [0.005:0.603]
 set arrow from 0.005,0 to 0.603,0 nohead lt 3 lc rgb 'black'
-pause -1