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setting up for analyses with varying error fit types to exist in parallel

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caes 2016-07-26 17:27:16 -04:00
parent ae199bcd8c
commit 7842e3fa99
4 changed files with 40 additions and 16 deletions
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6
notes/log
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@ -46,7 +46,11 @@ scripts/power_lag_plot.pl
2016-07-18 2016-07-18
Ran first MCMC run, need to analyze results Ran first MCMC run, need to analyze results
2016-07-26 2016-07-25
Determined MC is definitely the way to go, with at least 1000 simulations. Determined MC is definitely the way to go, with at least 1000 simulations.
Setup scripts to run simulations on Thor, one simulation per processor. Setup scripts to run simulations on Thor, one simulation per processor.
2016-07-26
MC giving huge errors. Putting together plots to send to Dr. Zoghbi.

23
scripts/analyze_lightcurves.sh
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@ -12,6 +12,11 @@ ref_curve="${lc_dir}/${ref_band}.lc"
error_type="2" error_type="2"
# error types: # error types:
# 0 for covariance matrix, 1 for likelihood function, 2 for monte carlo # 0 for covariance matrix, 1 for likelihood function, 2 for monte carlo
case $error_type in
"0") err_src="CM";;
"1") err_src="LF";;
"2") err_src="MC";;
esac
if [[ $1 == "thor" ]] if [[ $1 == "thor" ]]
then then
@ -32,7 +37,7 @@ do
# Determine band and inputs for band # Determine band and inputs for band
echo_band=$(basename $echo_curve|sed 's@\(.*\)\.lc@\1@') echo_band=$(basename $echo_curve|sed 's@\(.*\)\.lc@\1@')
echo -n $(date "+%R")\: Running psdlag for $echo_band against $ref_band. echo -n $(date "+%R")\: Running psdlag for $echo_band against $ref_band.
outputfile="analyses/${echo_band}≻${ref_band}_Δt＝${timestep}" outputfile="analyses/${echo_band}_≻_${ref_band}_Δt＝${timestep}_σ∊${err_src}"
case $echo_band in case $echo_band in
"g(𝛌＝4775Å)") "g(𝛌＝4775Å)")
initial_params="$refpsd_params -9.745e-01 -1.384e+00 -2.748e+00 -3.305e+00 -3.314e+00 -3.389e+00 -4.198e+00 -4.465e+00 -4.700e-01 -7.487e-01 -2.046e+00 -2.428e+00 -2.953e+00 -3.086e+00 -3.761e+00 -4.290e+00 9.862e-02 3.899e-01 8.650e-01 5.516e-01 2.228e-01 9.508e-01 -2.872e-01 9.059e-02" initial_params="$refpsd_params -9.745e-01 -1.384e+00 -2.748e+00 -3.305e+00 -3.314e+00 -3.389e+00 -4.198e+00 -4.465e+00 -4.700e-01 -7.487e-01 -2.046e+00 -2.428e+00 -2.953e+00 -3.086e+00 -3.761e+00 -4.290e+00 9.862e-02 3.899e-01 8.650e-01 5.516e-01 2.228e-01 9.508e-01 -2.872e-01 9.059e-02"
@ -113,8 +118,20 @@ do
else else
if [[ $1 == "thor" ]] if [[ $1 == "thor" ]]
then then
echo_band_noUTF=$(echo $echo_band|sed 's@𝛌@@g'|sed 's@(@_@g'|sed 's@)@_@g'|sed 's@＝@@g'|sed 's@Å@A@g') echo_band_noUTF=$(echo $echo_band|
outputfile_noUTF=$(echo $outputfile|sed 's@𝛌@@g'|sed 's@(@_@g'|sed 's@)@_@g'|sed 's@＝@@g'|sed 's@Å@A@g'|sed 's@≻@_@g') sed 's@𝛌@@g'|
sed 's@(@_@g'|
sed 's@)@_@g'|
sed 's@＝@@g'|
sed 's@Å@A@g')
outputfile_noUTF=$(echo $outputfile|
sed 's@𝛌@@g'|
sed 's@(@_@g'|
sed 's@)@_@g'|
sed 's@＝@@g'|
sed 's@Å@A@g'|
sed 's@≻@_@g'|
sed 's@σ∊@err@')
argsfile="thor/arguments/$echo_band_noUTF.args" argsfile="thor/arguments/$echo_band_noUTF.args"
submitscript="thor/${echo_band_noUTF}.pbs" submitscript="thor/${echo_band_noUTF}.pbs"
cp tmp.psdlagargs $argsfile cp tmp.psdlagargs $argsfile

15
scripts/create_plots.sh
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@ -22,17 +22,18 @@ mkdir -p analyses/plots
for analysis in analyses/* for analysis in analyses/*
do do
# Grab and determine labels of analyses, skip if over the same band. # Grab and determine labels of analyses, skip if over the same band.
ref_band=$(basename $analysis|sed 's@[^≻]*≻\([^≻_]*\)_[^_]*@\1@') ref_band=$(basename $analysis|sed 's@[^≻]*_≻_\([^≻_]*\)_[^_]*@\1@')
echo_band=$(basename $analysis|sed 's@\([^≻]*\)≻[^≻_]*_[^_]*@\1@') echo_band=$(basename $analysis|sed 's@\([^≻]*\)_≻_[^≻_]*_[^_]*@\1@')
if [[ $ref_band == $echo_band ]]; then continue; fi if [[ $ref_band == $echo_band ]]; then continue; fi
err_type=$(basename $analysis|sed 's@[^≻]*≻[^≻_]*_[^_]\(σ∊[CLM][MFC]\)*@\1@')
# Prepare files # Prepare files
echo "Plotting PSD and time lags for $echo_band, referred to ${ref_band}." echo "Plotting PSD and time lags for $echo_band, referred to ${ref_band}."
echoPSD_tabfile=analyses/tables/${echo_band}_PSD.tab echoPSD_tabfile=analyses/tables/${echo_band}_${err_type}_PSD.tab
refPSD_tabfile=analyses/tables/${ref_band}_PSD.tab refPSD_tabfile=analyses/tables/${ref_band}_${err_type}_PSD.tab
timelag_tabfile=analyses/tables/${echo_band}_≻_${ref_band}_delay.tab timelag_tabfile=analyses/tables/${echo_band}_≻_${ref_band}_${err_type}_timelag.tab
PSD_plotfile=analyses/plots/${echo_band}_≻_${ref_band}_PSD.png PSD_plotfile=analyses/plots/${echo_band}_≻_${ref_band}_${err_type}_PSD.png
timelag_plotfile=analyses/plots/${echo_band}_≻_${ref_band}_timelag.png timelag_plotfile=analyses/plots/${echo_band}_≻_${ref_band}_${err_type}_timelag.png
# Output curves to temporary files using perl script, move tables to # Output curves to temporary files using perl script, move tables to
# permanent location. This just assumes there are no conflicts. # permanent location. This just assumes there are no conflicts.

12
scripts/fix_thor_names.sh
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@ -1,11 +1,13 @@
#!/usr/bin/env bash #!/usr/bin/env bash
for analysis in analysis/* for analysis in analyses/*
do do
basename $analysis| new_name=$(basename $analysis|
sed 's|A_|Å\)|g'| sed 's|A_|Å\)|g'|
sed 's|_\([0-9]+\)|\(𝛌＝\1|g'| sed 's|_\([0-9]\+\)|\(𝛌＝\1|g'|
sed 's|_|≻|'| sed 's|_|_≻_|'|
sed 's|Δt|Δt＝|' sed 's|Δt|Δt＝|'|
sed 's|err|σ∊|')_σ∊MC
mv $analysis analyses/$new_name
done done