replaced src with new version again because it was unclear that all source files were up-to-date.

src/.smhist

@@ -1,47 +0,0 @@
-data check.dat
-read f 1
-read pow 2
-limits f pow
-box
-ptype 10 3
-points f pow
-quit
-data check.dat
-read f 1
-read pow 2
-limits f pow
-ptype 10 3
-points f pow
-box
-quit
-data check.dat
-read f 1
-read pow 2
-limits f pow
-box
-ptype 10 3
-points f pow
-set lgf = log10(f)
-set lgf = alog10(f)
-set lgf = lg(f)
-erase
-box
-erase
-limits lgf pow
-points lgf pow
-box
-erase
-limits lgf 0. 3.
-box
-points lgf pow
-quit
-data check.dat
-read 1 f
-read f 1
-read pow 2
-set lgf = lg(f)
-limits lgf pow
-box
-ptype 10 3
-points lgf pow
-quit

src/README

@@ -1,32 +0,0 @@
-
-
-
-To compile, modify the file makefile to so that libdir and incdir point to where
-alglib library and header files are installed respectively, then run: make
-
-
-FILES:
-- README: this file
-- makefile: a make file for compiling
-- main.cpp: the main file, that process the input file, print help message if
-  needed and reads the light curves files. check readLC to see the light curve
-  format.
-- mod.cpp: contains the class mod, which is a base class that uses the likelihood method. This on its own does nothing, but it is meant to be inherited by others, e.g. psd , lag , lag10
-  etc ... It is here where the likelihood is calculated, and maximized.
-
-- psd.cpp: a child class of mod to calculate psds. psd10 is similar by it
-  calculate the log10 of psd. This is better than calculating the psd directly.
-
-- lag.cpp: a child class of mod to calculate cross spectra and phase lags.
-  similar to psd. there is also lag10 that calcualte the log10 of the cross
-  spectrum plus phase lag.
-
-- psdlag.cpp: a child class of mod to calculate psd and cross spec and phase
-  lag at the same time.
-
-- inc: contains the header files.
-
-- inc/mod.hpp: the header for mod.cpp. This file has the Mod class also, which
-  is a class that holds multiple mod's used for fitting multiple light curve
-  simultaneusly, each mod fits for one light curve, and the total log-likelihood
-  is the sum of individual likelihood (i.e. product of probabilities)

src/check.dat

@@ -1,6 +0,0 @@
-2.5e-5	4.681
-5.5e-5	3.358
-8.5e-5	2.911
-1.5e-4	2.650
-2.5e-4	1.864
-3.5e-4	0.605

src/fittedlags.dat

@@ -1,6 +0,0 @@
-1.022e-01 9.694e-01
-3.260e-01 9.192e-01
-5.118e-01 9.776e-01
-3.254e-01 9.269e-01
-1.000e+00 9.659e-01
-1.000e+00 9.891e-01

src/makefile

@@ -2,10 +2,8 @@
 
 #libdir='/eos/azoghbi/soft/usr/lib'
 #incdir='/eos/azoghbi/soft/usr/include'
-libdir='/home/caes/science/psdlag-agn/src'
+libdir='/home/caes/science/psdlag-agn/src/inc'
 incdir='/home/caes/science/psdlag-agn/src/inc'
 
-
-
 psdlag:
 	g++ *cpp -o psdlag -O3 -Wall -lalglib -I${incdir} -L${libdir}

src/stdafx.h

@@ -1,2 +0,0 @@
-
-