generalized some things and setup to plot comparisons of PSD and timelag for different error fit types

scripts/analyze_lightcurves.sh

@@ -38,7 +38,7 @@ do
     # Determine band and inputs for band
     echo_band=$(basename $echo_curve|sed 's@\(.*\)\.lc@\1@')
     echo -n $(date "+%R")\: Running psdlag for $echo_band against $ref_band.
-    outputfile="analyses/${ref_band}_≺_${echo_band}_Δt＝${timestep}_σ∊${err_src}"
+    outputfile="analyses/${ref_band}_≺_${echo_band}_{Δt＝${timestep};σ∊${err_src}}"
     case $echo_band in
         "4775Å")
             initial_params="$refpsd_params -9.745e-01 -1.384e+00 -2.748e+00 -3.305e+00 -3.314e+00 -3.389e+00 -4.198e+00 -4.465e+00 -4.700e-01 -7.487e-01 -2.046e+00 -2.428e+00 -2.953e+00 -3.086e+00 -3.761e+00 -4.290e+00 9.862e-02 3.899e-01 8.650e-01 5.516e-01 2.228e-01 9.508e-01 -2.872e-01 9.059e-02"
@@ -120,18 +120,20 @@ do
         if [[ $1 == "thor" ]]
         then
             echo_band_noUTF=$(echo $echo_band|
-                sed 's|𝛌||g'|
+                #sed 's|𝛌||g'|
-                sed 's|(|_|g'|
+                #sed 's|(|_|g'|
-                sed 's|)|_|g'|
+                #sed 's|)|_|g'|
                 sed 's|＝||g'|
                 sed 's|Å|A|g')
             outputfile_noUTF=$(echo $outputfile|
-                sed 's|𝛌||g'|
+                #sed 's|𝛌||g'|
-                sed 's|(|_|g'|
+                #sed 's|(|_|g'|
-                sed 's|)|_|g'|
+                #sed 's|)|_|g'|
                 sed 's|＝||g'|
+                sed 's|[{}]|_|g'|
+                sed 's|;|_|'|
                 sed 's|Å|A|g'|
-                sed 's|≺|_|g'|
+                sed 's|_≺_|_|g'|
                 sed 's|σ∊|err|')
             argsfile="thor/arguments/$echo_band_noUTF.args"
             submitscript="thor/${echo_band_noUTF}.pbs"

scripts/fix_thor_names.sh

@@ -1,13 +1,20 @@
 #!/usr/bin/env bash
 
 
-for analysis in analyses/*
+for analysis in analyses/*A_*
 do
+    if [[ $analysis == "analyses/*A_*" ]]; then continue; fi
+    echo Restoring unicode characters to $analysis.
     new_name=$(basename $analysis|
-        sed 's|A_|Å\)|g'|
+        #sed 's|_\([0-9]\+\)|\(𝛌＝\1|g'|
-        sed 's|_\([0-9]\+\)|\(𝛌＝\1|g'|
+        sed 's|_|≺|'|
-        sed 's|_|_≺_|'|
+        sed 's|_|{|'|
+        sed 's|_|;|'|
+        #sed 's|_|}|'|
+        sed 's|A|Å|'|
+        sed 's|A|Å_|'|
+        sed 's|≺|_≺_|'|
         sed 's|Δt|Δt＝|'|
-        sed 's|err|σ∊|')_σ∊MC
+        sed 's|err|σ∊|')}
     mv $analysis analyses/$new_name
 done

scripts/plot_MC_against_CM.sh

@@ -1,13 +1,17 @@
-for table in analyses/tables/*_σ∊MC_timelag*
+for table in analyses/tables/timelag*MC}.tab
 do
-    ref_band=$(basename $table|sed 's|\([^≺]*\)_≺_[^≺_]*_[^_]*_[^_]*\.tab|\1|')
+    #ref_band=$(basename $table|sed 's|\([^≺]*\)_≺_[^≺_]*_[^_]*_[^_]*\.tab|\1|')
-    echo_band=$(basename $table|sed 's|[^≺]*_≺_\([^≺_]*\)_[^_]*_[^_]*\.tab|\1|')
+    #echo_band=$(basename $table|sed 's|[^≺]*_≺_\([^≺_]*\)_[^_]*_[^_]*\.tab|\1|')
-    if [[ $ref_band == $echo_band ]]; then continue; fi
-    err_str=$(basename $table|sed 's|[^≺]*_≺_[^≺_]*_\(σ∊[CLM][MFC]\)\_[^_]*.tab|\1|')
-
     CMtable=$(echo $table|sed 's|∊MC|∊CM|')
 
-    plotfile=analyses/plots/${echo_band}_error_compare.png
+    ref_band=$(basename $table|sed 's|timelag_\([^≺]*\)[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*}.tab|\1|')
+    echo_band=$(basename $table|sed 's|timelag_[^≺]*[_ ]≺[_ ]\([^≺_ ]*\)[_ ]{[^_ ]*}.tab|\1|')
+    if [[ $ref_band == $echo_band ]]; then continue; fi
+    err_str=$(basename $table|sed 's|timelag_[^≺]*[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*\(σ∊[CLM][MFC]\)}.tab|\1|')
+
+    echo Plotting timelag error fit comparison for $echo_band.
+
+    plotfile=analyses/plots/timelag_${echo_band}_error_compare.png
 
     echo_band_noUTF=$(echo $echo_band|
         sed 's|𝛌|λ|g'|
@@ -24,12 +28,54 @@ do
         sed 's|Å|A|g')
 
     cat scripts/templates/timelag_compare.gp|
-        sed "s|%TITLE|Error Fit Comparison for Time Lag of $echo_band_noUTF|"|
+        sed "s|%TITLE|Error Fit Comparison for Time Lag of $echo_band|"|
-        sed "s|%SUBTITLE|referred to ${ref_band_noUTF}, as reported by Fausnaugh et. al, STORM III, 2016|"|
+        sed "s|%SUBTITLE|referred to ${ref_band}, as reported by Fausnaugh et. al, STORM III, 2016|"|
         sed "s|%FILE1|$table|"|
-        sed "s|%LABEL1|${echo_band_noUTF} with Monte Carlo Fit|"|
+        sed "s|%LABEL1|${echo_band} Delay with Monte Carlo Fit|"|
         sed "s|%FILE2|$CMtable|"|
-        sed "s|%LABEL2|${echo_band_noUTF} with Covariance Matrix Fit|"|
+        sed "s|%LABEL2|${echo_band} Delay with Covariance Matrix Fit|"|
+        sed "s|%YMIN|$ymin|"|sed "s|%YMAX|$ymax|"|
+        sed "s|%OUTPUTFILE|$plotfile|" > tmp.gp
+    gnuplot tmp.gp
+
+done
+
+
+for table in analyses/tables/PSD*MC}.tab
+do
+    #ref_band=$(basename $table|sed 's|\([^≺]*\)_≺_[^≺_]*_[^_]*_[^_]*\.tab|\1|')
+    #echo_band=$(basename $table|sed 's|[^≺]*_≺_\([^≺_]*\)_[^_]*_[^_]*\.tab|\1|')
+    CMtable=$(echo $table|sed 's|∊MC|∊CM|')
+
+    echo_band=$(basename $table|sed 's|PSD[_ ]\([0-9]\{4\}\)Å[_ ]{[^_ ]*}.tab|\1Å|')
+    if [[ $ref_band == $echo_band ]]; then continue; fi
+    err_str=$(basename $table|sed 's|PSD[ _]\([0-9]\{4\}\)Å[_ ]{[^_ ]*\(σ∊[CLM][MFC]\)}.tab|\1|')
+
+    echo Plotting PSD error fit comparison for $echo_band.
+
+    plotfile=analyses/plots/PSD_${echo_band}_error_compare.png
+
+    echo_band_noUTF=$(echo $echo_band|
+        sed 's|𝛌|λ|g'|
+        #sed 's|(|_|g'|
+        #sed 's|)|_|g'|
+        sed 's|＝|=|g'|
+        sed 's|Å|A|g')
+
+    ref_band_noUTF=$(echo $ref_band|
+        sed 's|𝛌|λ|g'|
+        #sed 's|(|_|g'|
+        #sed 's|)|_|g'|
+        sed 's|＝|=|g'|
+        sed 's|Å|A|g')
+
+    cat scripts/templates/psd_freq.gp|
+        sed "s|%TITLE|Error Fit Comparison for PSD of $echo_band|"|
+        sed "s|%SUBTITLE|as reported by Fausnaugh et. al, STORM III, 2016|"|
+        sed "s|%FILE1|$table|"|
+        sed "s|%LABEL1|${echo_band} PSD with Monte Carlo Fit|"|
+        sed "s|%FILE2|$CMtable|"|
+        sed "s|%LABEL2|${echo_band} PSD with Covariance Matrix Fit|"|
         sed "s|%YMIN|$ymin|"|sed "s|%YMAX|$ymax|"|
         sed "s|%OUTPUTFILE|$plotfile|" > tmp.gp
     gnuplot tmp.gp

scripts/plot_psdlag.sh

@@ -19,21 +19,26 @@ mkdir -p analyses/tables
 mkdir -p analyses/plots
 
 
+# Restore the proper naming conventions for any files stripped
+# of their unicode characters.
+scripts/fix_thor_names.sh
+
+# Create tables and plot the power spectra distributions and time lags.
 for analysis in analyses/*
 do
     # Grab and determine labels of analyses, skip if over the same band.
-    ref_band=$(basename $analysis|sed 's@\([^≺]*\)[_ ]≺[_ ][^≺_ ]*[_ ][^_ ]*[_ ][^_ ]*@\1@')
+    ref_band=$(basename $analysis|sed 's|\([^≺]*\)[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*}|\1|')
-    echo_band=$(basename $analysis|sed 's@[^≺]*[_ ]≺[_ ]\([^≺_ ]*\)[_ ][^_ ]*[_ ][^_ ]*@\1@')
+    echo_band=$(basename $analysis|sed 's|[^≺]*[_ ]≺[_ ]\([^≺_ ]*\)[_ ]{[^_ ]*}|\1|')
     if [[ $ref_band == $echo_band ]]; then continue; fi
-    err_type=$(basename $analysis|sed 's@[^≺]*[_ ]≺[_ ][^≺_ ]*[_ ][^_ ]*[_ ]\(σ∊[CLM][MFC]\)@\1@')
+    err_str=$(basename $analysis|sed 's|[^≺]*[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*;\(σ∊[CLM][MFC]\)}|\1|')
 
     # Prepare files
     echo "Plotting PSD and time lags for $echo_band, referred to ${ref_band}."
-    echoPSD_tabfile=analyses/tables/${echo_band}_${err_type}_PSD.tab
+    echoPSD_tabfile=analyses/tables/PSD_${echo_band}_\{${err_str}\}.tab
-    refPSD_tabfile=analyses/tables/${ref_band}_${err_type}_PSD.tab
+    refPSD_tabfile=analyses/tables/PSD_${ref_band}_\{${err_str}\}.tab
-    timelag_tabfile=analyses/tables/${ref_band}_≺_${echo_band}_${err_type}_timelag.tab
+    timelag_tabfile=analyses/tables/timelag_${ref_band}_≺_${echo_band}_\{${err_str}\}.tab
-    PSD_plotfile=analyses/plots/${ref_band}_≺_${echo_band}_${err_type}_PSD.png
+    PSD_plotfile=analyses/plots/PSD_${ref_band}_≺_${echo_band}_\{${err_str}\}.png
-    timelag_plotfile=analyses/plots/${ref_band}_≺_${echo_band}_${err_type}_timelag.png
+    timelag_plotfile=analyses/plots/timelag_${ref_band}_≺_${echo_band}_\{${err_str}\}.png
 
     # Output curves to temporary files using perl script, move tables to
     # permanent location. This just assumes there are no conflicts.

scripts/templates/psd_freq.gp

@@ -18,6 +18,10 @@ set xrange [0.005:0.620]
 set logscale x
 set ylabel "log_{10} PSD"
 #set yrange [%YMIN:%YMAX]
-set yrange [-5.5:0.5]
+#set yrange [-5.5:0.5]
+
+set key outside
+set key center bottom
+
 plot '%FILE1' using 1:2:3:4 with xyerrorbars title "%LABEL1", \
 '%FILE2' using 1:2:3:4 with xyerrorbars title "%LABEL2"

scripts/templates/timelag_compare.gp

@@ -11,9 +11,11 @@ set logscale x
 set ylabel "Lag [days]"
 #set yrange [%YMIN:%YMAX]
 
+set key outside
+set key center bottom
+
 # Draw line at origin
 set arrow from 0.005,0 to 0.620,0 nohead lt 3 lc rgb 'black'
-
+set pointsize 0
-
 plot '%FILE1' using 1:2:3:4 with xyerrorbars title "%LABEL1", \
 "%FILE2" using 1:2:3:4 with xyerrorbars title "%LABEL2"