From 4247045fa92da0bd016a1bbc70dab3cb0f165b30 Mon Sep 17 00:00:00 2001
From: othocaeS <xaw5719@wmich.edu>
Date: Mon, 11 Jul 2016 13:14:36 -0400
Subject: [PATCH] added some bash operations to run bulk analyses

---
 scripts/analyze_lightcurves.sh | 18 ++++++++++++++++++
 scripts/prep_lcfiles.sh        |  3 +++
 2 files changed, 21 insertions(+)
 create mode 100755 scripts/analyze_lightcurves.sh
 create mode 100755 scripts/prep_lcfiles.sh

diff --git a/scripts/analyze_lightcurves.sh b/scripts/analyze_lightcurves.sh
new file mode 100755
index 0000000..1d63b96
--- /dev/null
+++ b/scripts/analyze_lightcurves.sh
@@ -0,0 +1,18 @@
+#!/usr/local/bin/bash
+
+for curvefile in data/STORM_III/lightcurves/Δt≔0.01/*
+do 
+    echo Running psdlag for $curvefile.
+    newfilename=analyses/HST1367∠$(basename $curvefile|sed 's@\(.*\)\.lc@\1@')_$(basename $(dirname $curvefile))
+    inputfile.tmp >> 2
+    inputfile.tmp >> data/STORM_III/lightcurves/HST1367.lc 0
+    inputfile.tmp >> $curvefile 0
+    inputfile.tmp >> 8 0.005 0.019 0.0425 0.07 0.11 0.17 0.24 0.4 0.603
+    inputfile.tmp >> 0
+    inputfile.tmp >> 1 1 1 0.49 0.42 0.30 0.36 1.2 -0.60 -0.89 -0.72 2.39 -0.74 -1.5 -1 -3.1 -1.3 -2.3 -2 -1.9 -1.6 -2.6 -2 -1.3 -1.8 -2.6 -1.2 0 -2 -2.7 -1.3 0.63
+    inputfile.tmp >> 0:0 0
+    inputfile.tmp >> 0
+    inputfile.tmp >> 0
+    inputfile.tmp >> 100 50 50 mcmc.dat
+    bin/psdlag inputfile.tmp >> $newfilename
+done
\ No newline at end of file
diff --git a/scripts/prep_lcfiles.sh b/scripts/prep_lcfiles.sh
new file mode 100755
index 0000000..6354591
--- /dev/null
+++ b/scripts/prep_lcfiles.sh
@@ -0,0 +1,3 @@
+#!/usr/local/bin/bash
+
+for file in data/STORM_III/raw/separated/*; do scripts/heasoft_to_psdlag.pl < $file > data/STORM_III/lightcurves/Δt≔0.01/$(basename $file|sed 's@\(.*\)\.tab@\1.lc@'); done
\ No newline at end of file