Science/psdlag-agn
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added support for thor

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othocaeS 2016-07-25 16:58:16 -04:00
parent 510d59a989
commit 3ca216325d
1 changed files with 27 additions and 3 deletions
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30
scripts/analyze_lightcurves.sh
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@ -13,6 +13,16 @@ error_type="2"
# error types: # error types:
# 0 for covariance matrix, 1 for likelihood function, 2 for monte carlo # 0 for covariance matrix, 1 for likelihood function, 2 for monte carlo
if [[ $1 == "thor" ]]
then
echo Setting up Thor environment.
mkdir -p thor
mkdir -p thor/arguments
if [[ -e thor/submissions ]]; then echo "" >> thor/submissions; fi
date >> thor/submissions
echo "─────────────────────────────" >> thor/submissions
fi
echo Using lightcurves in $lc_dir. echo Using lightcurves in $lc_dir.
for echo_curve in $lc_dir/* for echo_curve in $lc_dir/*
@ -20,7 +30,7 @@ do
# Determine band and inputs for band # Determine band and inputs for band
echo_band=$(basename $echo_curve|sed 's@\(.*\)\.lc@\1@') echo_band=$(basename $echo_curve|sed 's@\(.*\)\.lc@\1@')
echo -n $(date "+%R")\: Running psdlag for $echo_band against $ref_band. echo -n $(date "+%R")\: Running psdlag for $echo_band against $ref_band.
newfilename="analyses/${echo_band}≻${ref_band}_Δt＝${timestep}" outputfile="analyses/${echo_band}≻${ref_band}_Δt＝${timestep}"
case $echo_band in case $echo_band in
"g(𝛌＝4775Å)") "g(𝛌＝4775Å)")
initial_params="$refpsd_params -9.745e-01 -1.384e+00 -2.748e+00 -3.305e+00 -3.314e+00 -3.389e+00 -4.198e+00 -4.465e+00 -4.700e-01 -7.487e-01 -2.046e+00 -2.428e+00 -2.953e+00 -3.086e+00 -3.761e+00 -4.290e+00 9.862e-02 3.899e-01 8.650e-01 5.516e-01 2.228e-01 9.508e-01 -2.872e-01 9.059e-02" initial_params="$refpsd_params -9.745e-01 -1.384e+00 -2.748e+00 -3.305e+00 -3.314e+00 -3.389e+00 -4.198e+00 -4.465e+00 -4.700e-01 -7.487e-01 -2.046e+00 -2.428e+00 -2.953e+00 -3.086e+00 -3.761e+00 -4.290e+00 9.862e-02 3.899e-01 8.650e-01 5.516e-01 2.228e-01 9.508e-01 -2.872e-01 9.059e-02"
@ -95,11 +105,25 @@ do
echo -n "100 50 50 mcmc_${echo_band}.dat" >> tmp.psdlagargs echo -n "100 50 50 mcmc_${echo_band}.dat" >> tmp.psdlagargs
# Run psdlag with inputs # Run psdlag with inputs
if [[ -e $newfilename ]] if [[ -e $outputfile ]]
then then
echo -n " Analysis already exists; skipping." echo -n " Analysis already exists; skipping."
else else
time bin/psdlag tmp.psdlagargs >> $newfilename if [[ $1 == "thor" ]]
then
argsfile="thor/arguments/$echo_band.args"
submitscript="thor/${echo_band}.pbs"
cp tmp.psdlagargs $argsfile
cat scripts/templates/thor_submit.pbs|
sed "s@%ARGSFILE%@${argsfile}@"|
sed "s@%ROOTDIR%@$(pwd)@"|
sed "s@%OUTPUTFILE%@${outputfile}@" > $submitscript
cd thor
qsub $submitscript >> $thordir/submissions
cd ..
else
time bin/psdlag tmp.psdlagargs > $outputfile
fi
fi fi
echo "" echo ""
done done