renamed script

scripts/plot_MC_against_CM.sh

@@ -69,7 +69,7 @@ do
         sed 's|＝|=|g'|
         sed 's|Å|A|g')
 
-    cat scripts/templates/psd_freq.gp|
+    cat scripts/templates/psd.gp|
         sed "s|%TITLE|Error Fit Comparison for PSD of $echo_band|"|
         sed "s|%SUBTITLE|as reported by Fausnaugh et. al, STORM III, 2016|"|
         sed "s|%FILE1|$table|"|

scripts/plot_psdlag.sh

@@ -29,7 +29,6 @@ do
     # Grab and determine labels of analyses, skip if over the same band.
     ref_band=$(basename $analysis|sed 's|\([^≺]*\)[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*}|\1|')
     echo_band=$(basename $analysis|sed 's|[^≺]*[_ ]≺[_ ]\([^≺_ ]*\)[_ ]{[^_ ]*}|\1|')
-    if [[ $ref_band == $echo_band ]]; then continue; fi
     err_str=$(basename $analysis|sed 's|[^≺]*[_ ]≺[_ ][^≺_ ]*[_ ]{[^_ ]*;\(σ∊[CLM][MFC]\)}|\1|')
 
     # Prepare files
@@ -37,8 +36,8 @@ do
     echoPSD_tabfile=analyses/tables/PSD_${echo_band}_\{${err_str}\}.tab
     refPSD_tabfile=analyses/tables/PSD_${ref_band}_\{${err_str}\}.tab
     timelag_tabfile=analyses/tables/timelag_${ref_band}_≺_${echo_band}_\{${err_str}\}.tab
-    PSD_plotfile=analyses/plots/PSD_${ref_band}_≺_${echo_band}_\{${err_str}\}.png
+    PSD_plotfile=analyses/plots/PSD_${echo_band}_\{${err_str}\}.pdf
-    timelag_plotfile=analyses/plots/timelag_${ref_band}_≺_${echo_band}_\{${err_str}\}.png
+    timelag_plotfile=analyses/plots/timelag_${ref_band}_≺_${echo_band}_\{${err_str}\}.pdf
 
     # Output curves to temporary files using perl script, move tables to
     # permanent location. This just assumes there are no conflicts.
@@ -51,26 +50,26 @@ do
     # Plot PSD and save using gnuplot
 #    read ymin ymax <<< $(ywindow_of $timelag_tabfile)
 #    echo $ymin $ymax
-    cat scripts/templates/psd_freq.gp|
+    cat scripts/templates/psd.gp|
-        sed "s|%TITLE|Power Spectrum for Lightcurves $echo_band and $ref_band|"|
+        sed "s|%TITLE%|Power Spectrum for Lightcurves $echo_band and $ref_band|"|
-        sed "s|%SUBTITLE|as reported by Fausnaugh et. al, STORM III, 2016|"|
+        sed "s|%SUBTITLE%|as reported by Fausnaugh et. al, STORM III, 2016|"|
-        sed "s|%FILE1|$refPSD_tabfile|"|
+        sed "s|%FILE1%|$echoPSD_tabfile|"|
-        sed "s|%LABEL1|${ref_band} PSD|"|
+        sed "s|%LABEL1%|${echo_band} PSD|"|
-        sed "s|%FILE2|$echoPSD_tabfile|"|
+        #sed "s|%FILE2%|$refPSD_tabfile|"|
-        sed "s|%LABEL2|${echo_band} PSD|"|
+        #sed "s|%LABEL2%|${ref_band} PSD|"|
-        sed "s|%YMIN|$ymin|"|sed "s|%YMAX|$ymax|"|
+        sed "s|%YMIN%|$ymin|"|sed "s|%YMAX|$ymax|"|
-        sed "s|%OUTPUTFILE|$PSD_plotfile|" > tmp.gp
+        sed "s|%OUTPUTFILE%|$PSD_plotfile|" > tmp.gp
     gnuplot tmp.gp
 
     # Plot time lags and save using gnuplot
 #    read ymin ymax <<< $(ywindow_of $timelag_tabfile)
     cat scripts/templates/timelag_freq.gp|
-        sed "s|%TITLE|Time Lag for Lightcurve $echo_band relative to $ref_band|"|
+        sed "s|%TITLE%|Time Lag for Lightcurve $echo_band relative to $ref_band|"|
-        sed "s|%SUBTITLE|as reported by Fausnaugh et. al, STORM III, 2016|"|
+        sed "s|%SUBTITLE%|as reported by Fausnaugh et. al, STORM III, 2016|"|
-        sed "s|%FILE1|$timelag_tabfile|"|
+        sed "s|%FILE1%|$timelag_tabfile|"|
-        sed "s|%LABEL1|${echo_band} Lag|"|
+        sed "s|%LABEL1%|${echo_band} Lag|"|
-        sed "s|%YMIN|$ymin|"|sed "s|%YMAX|$ymax|"|
+        sed "s|%YMIN%|$ymin|"|sed "s|%YMAX|$ymax|"|
-        sed "s|%OUTPUTFILE|$timelag_plotfile|" > tmp.gp
+        sed "s|%OUTPUTFILE%|$timelag_plotfile|" > tmp.gp
     gnuplot tmp.gp
 done
 

scripts/templates/psd.gp

@@ -0,0 +1,37 @@
+# This method assumes y values are in logarithm units already.
+
+set terminal pdf
+set output "%OUTPUTFILE%"
+set termopt enhanced
+
+set macros
+
+    # Placement of the a,b,c,d labels in the graphs
+    POS = "at graph 0.7,0.92 font 'Times,24'"
+    
+
+
+    XLABEL = "set xlabel 'Temporal Frequency [days^{-1}]' font 'Times' off 0,1;\
+              set format x '10^{%+3T}'"
+    YLABEL = "set ylabel 'log_{10} PSD' font 'Times' offset 1,2.5;\
+              set format y '%.0t'"
+
+
+unset title
+unset key
+
+set xlabel "Temporal Frequency [days^{-1}]" font "Times,24"
+set xrange [0.005:0.620]
+set xtics auto font 'Times,16'
+set logscale x
+
+set ylabel "log_{10} PSD" font "Times,24"
+set yrange [-5.5:0.5]
+set ytics auto font 'Times,16'
+set ytics add ('' -0.5 1,'' -1.5 1,'' -2.5 1,'' -3.5 1,'' -4.5 1)
+set yzeroaxis
+
+set label 1 '%LABEL1%' @POS
+
+plot '%FILE1%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .5 lt rgb "black", \
+'%FILE2%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .5 lt rgb "red"

scripts/templates/psd_freq.gp

@@ -1,34 +0,0 @@
-# This method assumes y values are in logarithm units already.
-
-set terminal pdf
-set output "%OUTPUTFILE"
-# set termoption dash
-set termopt enhanced
-
-set title "%TITLE\n{/*0.7 %SUBTITLE}" font "Times"
-set xlabel "Temporal Frequency [days^{-1}]" font "Times"
-set xrange [0.005:0.620]
-set xtics font "Times"
-set ytics font "Times"
-
-# Use this if you want to show PSD directly on a log axis
-# set logscale xy
-# set ylabel "PSD" font "Times"
-# set yrange [%YMIN:%YMAX]
-# plot '%FILE1' using 1:(10**($2+2)):3:4 with xyerrorbars title "%LABEL1", \
-# '%FILE2' using 1:(10**($2+2)):3:4 with xyerrorbars title "%LABEL2"
-
-# Use this if you want to show the log value of the PSD
-set logscale x
-set ylabel "log_{10} PSD" font "Times"
-#set yrange [%YMIN:%YMAX]
-#set yrange [-5.5:0.5]
-
-set key outside
-set key center bottom
-set key font "Times"
-
-set yzeroaxis
-
-plot '%FILE1' using 1:2:3:4 with xyerrorbars title "%LABEL1" pt 0 ps 1 lt rgb "green", \
-'%FILE2' using 1:2:3:4 with xyerrorbars title "%LABEL2" pt 0 ps 1 lt rgb "red"