diff --git a/scripts/cloudy/magdziarz.mpi_grid.in b/scripts/cloudy/magdziarz.mpi_grid.in index 4644045..80fcfde 100644 --- a/scripts/cloudy/magdziarz.mpi_grid.in +++ b/scripts/cloudy/magdziarz.mpi_grid.in @@ -57,6 +57,29 @@ set nend 5000 // "print continuum" redundant with set nFnu in c17 // print continuum +// +// Jumps Added from Inspection, with mean wavelength as identifier +// Hydrogen Balmer, Paschen, Brackett +set nFnu add 3641 angstrom +set nFnu add 3653 angstrom +set nFnu add 8184 angstrom +set nFnu add 8211 angstrom +set nFnu add 8239 angstrom +set nFnu add 1456 angstrom +set nFnu add 1461 angstrom +// Possible Helium lines +set nFnu add 2046 angstrom +set nFnu add 2059 angstrom +set nFnu add 2592 angstrom +set nFnu add 2600 angstrom +set nFnu add 2609 angstrom +set nFnu add 1408 angstrom +set nFnu add 1413 angstrom +set nFnu add 1521 angstrom +set nFnu add 1826 angstrom +// +// Spread of continuum points +// set nFnu add 450 angstrom set nFnu add 650 angstrom set nFnu add 875 angstrom diff --git a/scripts/cloudy/mehdipour.mpi_grid.in b/scripts/cloudy/mehdipour.mpi_grid.in index 88620cb..262f35b 100644 --- a/scripts/cloudy/mehdipour.mpi_grid.in +++ b/scripts/cloudy/mehdipour.mpi_grid.in @@ -57,6 +57,29 @@ set nend 5000 // "print continuum" redundant with set nFnu in c17 // print continuum +// +// Jumps Added from Inspection, with mean wavelength as identifier +// Hydrogen Balmer, Paschen, Brackett +set nFnu add 3641 angstrom +set nFnu add 3653 angstrom +set nFnu add 8184 angstrom +set nFnu add 8211 angstrom +set nFnu add 8239 angstrom +set nFnu add 1456 angstrom +set nFnu add 1461 angstrom +// Possible Helium lines +set nFnu add 2046 angstrom +set nFnu add 2059 angstrom +set nFnu add 2592 angstrom +set nFnu add 2600 angstrom +set nFnu add 2609 angstrom +set nFnu add 1408 angstrom +set nFnu add 1413 angstrom +set nFnu add 1521 angstrom +set nFnu add 1826 angstrom +// +// Spread of continuum points +// set nFnu add 450 angstrom set nFnu add 650 angstrom set nFnu add 875 angstrom diff --git a/sed/magdziarz1997.tab b/sed/magdziarz1997.tab new file mode 100644 index 0000000..5101dc9 --- /dev/null +++ b/sed/magdziarz1997.tab @@ -0,0 +1,1000 @@ +1.36193e-07 1.00000e-35 nufnu units kev +1.40936e-07 1.00000e-35 +1.45843e-07 1.00000e-35 +1.50922e-07 1.00000e-35 +1.56178e-07 1.00000e-35 +1.61616e-07 1.00000e-35 +1.67244e-07 1.00000e-35 +1.73068e-07 1.00000e-35 +1.79095e-07 1.00000e-35 +1.85332e-07 1.00000e-35 +1.91785e-07 1.00000e-35 +1.98464e-07 1.00000e-35 +2.05375e-07 1.00000e-35 +2.12527e-07 1.00000e-35 +2.19928e-07 1.00000e-35 +2.27586e-07 1.00000e-35 +2.35512e-07 1.00000e-35 +2.43713e-07 1.00000e-35 +2.52200e-07 1.00000e-35 +2.60982e-07 1.00000e-35 +2.70070e-07 1.00000e-35 +2.79475e-07 1.00000e-35 +2.89207e-07 1.00000e-35 +2.99278e-07 1.00000e-35 +3.09700e-07 1.00000e-35 +3.20484e-07 1.00000e-35 +3.31645e-07 1.00000e-35 +3.43194e-07 1.00000e-35 +3.55145e-07 1.00000e-35 +3.67512e-07 1.00000e-35 +3.80310e-07 1.00000e-35 +3.93553e-07 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+1.02143e+02 6.56782e+12 +1.05700e+02 6.65406e+12 +1.09381e+02 6.74040e+12 +1.13190e+02 6.82667e+12 +1.17132e+02 6.91268e+12 +1.21211e+02 6.99821e+12 +1.25432e+02 7.08304e+12 +1.29799e+02 7.16691e+12 +1.34319e+02 7.24955e+12 +1.38997e+02 7.33067e+12 +1.43837e+02 7.40995e+12 +1.48846e+02 7.48706e+12 +1.54029e+02 7.56162e+12 +1.59393e+02 7.63324e+12 +1.64944e+02 7.70150e+12 +1.70687e+02 7.76596e+12 +1.76631e+02 7.82612e+12 +1.82782e+02 7.88148e+12 +1.89147e+02 7.93148e+12 +1.95734e+02 7.97556e+12 +2.02550e+02 8.01309e+12 +2.09603e+02 8.04371e+12 +2.16902e+02 8.06747e+12 +2.24455e+02 8.08458e+12 +2.32272e+02 8.09538e+12 +2.40360e+02 8.10040e+12 +2.48730e+02 8.10038e+12 +2.57392e+02 8.09573e+12 +2.66355e+02 8.08342e+12 +2.75630e+02 8.05838e+12 +2.85228e+02 8.01453e+12 +2.95161e+02 7.94469e+12 +3.05439e+02 7.84056e+12 +3.16076e+02 7.69671e+12 +3.27082e+02 7.51115e+12 +3.38472e+02 7.28220e+12 +3.50259e+02 7.00833e+12 +3.62456e+02 6.68826e+12 +3.75078e+02 6.32098e+12 +3.88139e+02 5.90584e+12 +4.01656e+02 5.44262e+12 +4.15642e+02 4.93164e+12 +4.30116e+02 4.37382e+12 +4.45094e+02 3.77082e+12 +4.60594e+02 3.12518e+12 +4.76633e+02 2.44046e+12 +4.93231e+02 1.72141e+12 5.10407e+02 1.28586e+12 5.28181e+02 1.08166e+12 5.46574e+02 9.09831e+11 diff --git a/sed/mehdipour2013/mehdipour2013_samples.tab b/sed/mehdipour2013/mehdipour2013_samples.tab index 0a55c73..ad57f60 100644 --- a/sed/mehdipour2013/mehdipour2013_samples.tab +++ b/sed/mehdipour2013/mehdipour2013_samples.tab @@ -1,8 +1,8 @@ 0.0013 9e11 0.002 2e12 0.004 4.5e12 -0.005 5e12 +0.005 4.92e12 1.3 1.3e12 200 8e12 -240 8.2e12 -300 8e12 \ No newline at end of file +250 8.1e12 +300 7.9e12 \ No newline at end of file diff --git a/sed/plots.R b/sed/plots.R index 1c9c50c..5e03996 100644 --- a/sed/plots.R +++ b/sed/plots.R @@ -9,14 +9,35 @@ plot (data,log="xy",type="l") - +# mehdipour zoomed with log lines data = read.table("mehdipour2013.tab") plot (data,log="xy",type="l",xlim=c(.001,300),ylim=c(1e11,1e13)) # mehdipour axes abline(v=0.001) abline(h=40e11) coords=read.table("mehdipour2013_samples.tab") -points(coords) +points(coords,pch="|") +powers = seq(-10,10,by=1) +coefficients = seq(2,9,by=1) +for (i in powers) { + abline(v=10^i,col="black",lty=1) + for (j in coefficients) { + abline(v=j*(10^i),col="black",lty=2) + } +} +powers = seq(-45,45,by=1) +coefficients = seq(2,9,by=1) +for (i in powers) { + abline(h=10^i,col="black",lty=1) + for (j in coefficients) { + abline(h=j*(10^i),col="black",lty=2) + } +} + + + + + data = read.table("mehdipour2013.tab") plot (data,log="xy",type="l") @@ -93,6 +114,7 @@ abline(v=500,col="red") +# print pdfs of normalized SEDs data1 = read.table("magdziarz_incident_continuum") data2 = read.table("mehdipour_incident_continuum") x1 = data1["V1"] @@ -100,7 +122,7 @@ y1 = data1["V2"] x2 = data2["V1"] y2 = data2["V2"] pdf("sed_overlay_with_boundaries.pdf") -plot(x1[,],y1[,],log="xy",type="l",xlim=c(1e-6,1e7),lwd=2,xlab="eV",ylab="nuFnu") +plot(x1[,],y1[,],log="xy",type="l",xlim=c(1e-8,1e5),lwd=2,xlab=expression(paste("h",nu," [keV]")),ylab=expression(paste(nu,"F",nu," [erg cm^-2 s^-1]"))) lines(x2[,],y2[,],type="l",col="red",lwd=2) powers = seq(-10,10,by=1) coefficients = c(2,5) @@ -121,10 +143,10 @@ for (i in powers) { } dev.off() pdf("sed_overlay_with_boundaries_zoomed.pdf") -plot(x1[,],y1[,],log="xy",type="l",lwd=2,xlim=c(0.001,1000),ylim=c(5e7,5e9),xlab="eV",ylab="nuFnu") +plot(x1[,],y1[,],log="xy",type="l",lwd=2,xlim=c(0.001,1000),ylim=c(5e7,5e9),xlab=expression(paste("h",nu," [keV]")),ylab=expression(paste(nu,"F",nu," [erg cm^-2 s^-1]"))) lines(x2[,],y2[,],type="l",col="red",lwd=2) powers = seq(-10,10,by=1) -coefficients = seq(2,8,by=1) +coefficients = seq(2,9,by=1) for (i in powers) { abline(v=10^i,col="black",lty=1) for (j in coefficients) { @@ -133,7 +155,7 @@ for (i in powers) { } powers = seq(-45,45,by=1) -coefficients = seq(2,8,by=1) +coefficients = seq(2,9,by=1) for (i in powers) { abline(h=10^i,col="black",lty=1) for (j in coefficients) { @@ -156,7 +178,17 @@ inci = read.table("cont_combined_inci",header=TRUE) diffuse = read.table("cont_combined_diffuse",header=TRUE) -# To plot inci with error bars for bin size + + +# To plot continuum with bins, both tables already in angstroms + +# prep tables +cut -f1,4 magdziarz_emitted_continuum_angstroms > cont +cut -f1,3 magdziarz_continuum_bins_angstroms > bins + +#R code +cont = read.table("cont",header=TRUE) +bins = read.table("bins",header=TRUE) plot(Enr,nFn,log="x",xlim=c(20,25),type="l") arrows(Enr-d.anu.,nFn,Enr+d.anu.,nFn,length=0.05,angle=90,code=3) arrows(Enr-d.anu.,nFn+5,Enr+d.anu.,nFn-5,length=0.05,angle=90,code=3)