Science/cloudy-agn
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cleaned up scripts

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caes 2017-08-17 19:53:04 -04:00
parent 23a9946b68
commit 7e7879e969
3 changed files with 16 additions and 5 deletions
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5
scripts/meta/process_gridoutputs.sh
View File

@ -7,8 +7,9 @@ script_dir=$(
base_dir=`pwd`
bin_dir="$script_dir/../bin"
for dir in $(find . -type 'd' -name 'cldn*')
for file in $(find . -type 'f' -name 'mpi_grid.out')
do
echo "Processing ${dir}."
echo "Processing ${file}."
dir=$(dirname $file)
$script_dir/operations/package_tables.sh $dir
done

10
scripts/operations/package_tables.sh
View File

@ -23,8 +23,11 @@ fi
cd $griddir
if [[ -not -e "mpi_grid.out" ]]; then
echo "no mpi_grid.out file"
if [[ -e "mpi_grid.out" ]]; then
echo -n ""
else
echo "mpi_grid.out doesn't exist"
cd $base_dir
exit 6
fi
@ -32,6 +35,9 @@ mkdir -p fortfiles
cd fortfiles
# pwd
cp ../mpi_grid.in .
cp ../*.tab .
echo "Directory ready. Calling fort file creation."
$bin_dir/create_fort_files ../mpi_grid.out $script_dir/../reference/linelist.c17

6
src/create_fort_files.cpp
View File

@ -1,6 +1,10 @@
#include "agn.hpp"
#include "spectral_lines.hpp"
// When this number of iterations is achieved, the program flags it
// as a possible failure.
double MAX_ITERATIONS = 15;
int main(int argc, char const *argv[]) {
std::ifstream cloudy_result_file;
@ -90,7 +94,7 @@ int main(int argc, char const *argv[]) {
<< "The following solutions probably did not converge."
<< std::endl << std::endl;
while(result_it != grid.end()) {
if (result_it->second.iterations >= 40) {
if (result_it->second.iterations >= MAX_ITERATIONS) {
num_unconverged++;
cautionreportfile
<< "hden = "