setup to run c17 release grids

scripts/thor/cloudy_grid.pbs

@@ -15,4 +15,4 @@ module load openmpi/gnu/1.7.3
 
 # replace ~/cloudy-agn/bin/cloudy_mpi with path to cloudy MPI executable file
 cd ~/${RUN_DIR}
-time mpirun -machinefile ${PBS_NODEFILE} -np ${num_proc} ~/cloudy-agn/bin/cloudy_mpi -r ${RUN_FILE}
+time mpirun -machinefile ${PBS_NODEFILE} -np ${num_proc} ~/cloudy/bin/cloudy_mpi -r ${RUN_FILE}

src/agn.hpp

@@ -38,6 +38,10 @@ typedef table2d::iterator iterator2d;
 typedef std::pair<double,double> coord2d;
 typedef std::list<coord2d> gridcoordlist;
 
+//  Seeks an instream to the line after the first occurrence of seek_string.
+void seek_to(std::string,std::istream&);
+
+
 struct cloudy_line_data {
 	double radiated_energy,eq_width;
 	int index;
@@ -68,12 +72,13 @@ struct cloudy_result {
 };
 
 typedef std::map<coord2d,cloudy_result> cloudy_grid;
+
 //	Easiest to read the entire grid from the file at once.
 cloudy_grid read_cloudy_grid(std::ifstream&);
+
 //	Operator<< prints general info about the run result.
 std::ostream& operator<< (std::ostream&, cloudy_result);
-//  Seeks an instream to the line after the first occurrence of seek_string.
-void seek_to(std::string,std::istream&);
+
 
 
 } // end namespace agn

src/create_fort_files.cpp

@@ -23,7 +23,8 @@ int main(int argc, char const *argv[]) {
 		<< "Compiling table2ds for "
 		<< lines_to_print.size()
 		<< " emission lines.\n";
-	std::list<agn::eqwidth_table> tables = agn::compile_eqwidth_tables(grid,lines_to_print,1215.00);
+	std::list<agn::eqwidth_table> tables = 
+        agn::compile_eqwidth_tables(grid,lines_to_print,1215.00);
 
 
     // Remove any tables that are zero.
@@ -91,7 +92,8 @@ int main(int argc, char const *argv[]) {
                 << std::endl
                 << "───────────────────────────"
                 << std::endl;
-            std::list<std::string>::iterator caution_it = result_it->second.cautions.begin();
+            std::list<std::string>::iterator caution_it =
+                result_it->second.cautions.begin();
             while(caution_it != result_it->second.cautions.end()) {
                 cautionreportfile
                     << *caution_it