mirror of
https://asciireactor.com/otho/clag-agn.git
synced 2024-11-21 17:35:07 +00:00
more scripts
This commit is contained in:
caes
parent
503d5545d1
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@ -45,6 +45,38 @@ case $1 in
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rm $gnuplot_file
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;;
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"twolags"|"2lags")
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gnuplot_file=lag_overlay_atlas.gp
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gnuplot_input=$(cat scripts/templates/${gnuplot_file}|perl -pe 's|\n||g')
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for tabfile in data/tables/${2}/lag_*.tab;
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do
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ref_band_extracted=$(basename $tabfile|
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sed 's|lag_\([0-9]\{4\}A\)_[0-9]\{4\}A.tab|\1|')
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echo_band=$(basename $tabfile|
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sed 's|lag_[0-9]\{4\}A_\([0-9]\{4\}A\).tab|\1|')
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if [[ "$echo_band" == "$ref_band" ]] ; then continue; fi
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gnuplot_input_edit=$(echo "$gnuplot_input"|
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sed "s|%FILE%|$tabfile|"|
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sed "s|%LABEL%|$echo_band|")
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gnuplot_input="${gnuplot_input_edit}"
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done
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for tabfile in data/tables/${3}/lag_*.tab;
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do
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ref_band_extracted=$(basename $tabfile|
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sed 's|lag_\([0-9]\{4\}A\)_[0-9]\{4\}A.tab|\1|')
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echo_band=$(basename $tabfile|
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sed 's|lag_[0-9]\{4\}A_\([0-9]\{4\}A\).tab|\1|')
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if [[ "$echo_band" == "$ref_band" ]] ; then continue; fi
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gnuplot_input_edit=$(echo "$gnuplot_input"|
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sed "s|%FILE%|$tabfile|"|
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sed "s|%LABEL%|$echo_band|")
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gnuplot_input="${gnuplot_input_edit}"
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done
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echo "$gnuplot_input"|perl -pe 's||\n|g' > ${gnuplot_file}
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gnuplot $gnuplot_file
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rm $gnuplot_file
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;;
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"tophat"|"th")
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mkdir -p data/tables/
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scripts/tophat_fft.pl
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@ -22,11 +22,16 @@ t1, l1, l1e = np.loadtxt(ref_file).T
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# errorbar(t1, l1, yerr=l1e, fmt='o')
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fqL = np.array([0.0049999999, 0.044733049, 0.10747115,
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0.25819945, 0.62032418])
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#fqL = np.array([0.0049999999, 0.018619375, 0.069336227, 0.10747115, 0.62032418])
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#A
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#fqL = np.logspace(np.log10(0.005),np.log10(0.6),5)
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#B
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#fqL = np.array([0.0049999999, 0.018619375, 0.069336227,
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# 0.10747115, 0.62032418])
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#C
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fqL = np.array([0.0049999999, 0.044733049, 0.10747115,
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0.22, 0.56])
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nfq = len(fqL) - 1
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fqd = 10**(np.log10( (fqL[:-1]*fqL[1:]) )/2.)
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@ -40,8 +45,6 @@ p1, p1e = clag.optimize(P1, p1)
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p1, p1e = clag.errors(P1, p1, p1e)
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# xscale('log'); ylim(-4,2)
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# errorbar(fqd, p1, yerr=p1e, fmt='o', ms=10, color="black")
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ref_psd = p1
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ref_psd_err = p1e
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@ -49,8 +52,6 @@ ref_psd_err = p1e
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t2, l2, l2e = np.loadtxt(echo_file).T
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# errorbar(t1, l1, yerr=l1e, fmt='o', color="green")
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# errorbar(t2, l2, yerr=l2e, fmt='o', color="black")
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P2 = clag.clag('psd10r', [t2], [l2], [l2e], dt, fqL)
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@ -59,45 +60,39 @@ p2, p2e = clag.optimize(P2, p2)
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p2, p2e = clag.errors(P2, p2, p2e)
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# xscale('log'); ylim(-6,2)
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# errorbar(fqd, p1, yerr=p1e, fmt='o', ms=10, color="green")
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# errorbar(fqd, p2, yerr=p2e, fmt='o', ms=10, color="black")
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echo_psd = p2
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echo_psd_err = p2e
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Cx = clag.clag('cxd10r', [[t1,t2]], [[l1,l2]], [[l1e,l2e]], dt, fqL, p1, p2)
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p = np.concatenate( ((p1+p2)*0.5-0.3,p1*0+0.1) ) # a good starting point generally
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Cx = clag.clag('cxd10r',
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[[t1,t2]],
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[[l1,l2]],
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[[l1e,l2e]],
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dt, fqL, p1, p2)
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# a good starting point generally
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p = np.concatenate( ((p1+p2)*0.5-0.3,p1*0+0.1) )
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p, pe = clag.optimize(Cx, p)
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phi, phie = p[nfq:], pe[nfq:]
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lag, lage = phi/(2*np.pi*fqd), phie/(2*np.pi*fqd)
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cx, cxe = p[:nfq], pe[:nfq]
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cross_spectrm = cx
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cross_spectrm_err = cxe
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crs_spectrm = cx
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crs_spectrm_err = cxe
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# xscale('log'); ylim(-2,1)
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# errorbar(fqd, lag, yerr=lage, fmt='o', ms=10,color="black")
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s, loc, scale = lognorm.fit(lag,loc=.01)
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# xscale('log'); ylim(-4,1.5)
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# errorbar(fqd, lag, yerr=lage, fmt='o', ms=10,color="black")
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##plot(fqd,norm.pdf(fqd,mu,sigma))
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#plot(fqd,lognorm.pdf(fqd,s,loc,scale))
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# mu,sigma
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#plot(ifft(lag))
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np.savetxt("freq.out",fqL.reshape((-1,len(fqL))))
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np.savetxt("ref_psd.out",[ref_psd,ref_psd_err])
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np.savetxt("echo_psd.out",[echo_psd,echo_psd_err])
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np.savetxt("crsspctrm.out",[cross_spectrm,cross_spectrm_err])
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np.savetxt("timelag.out",[lag,lage])
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np.savetxt("crsspctrm.out",[crs_spectrm,crs_spectrm_err])
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np.savetxt("lag.out",[lag,lage])
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102
scripts/psdlag_7bin.py
Normal file
102
scripts/psdlag_7bin.py
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@ -0,0 +1,102 @@
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#!/usr/bin/env python
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import numpy as np
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from scipy.stats import norm
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from scipy.stats import lognorm
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import sys
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import getopt
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sys.path.insert(1,"/usr/local/science/clag-agn/data/")
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import clag
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import matplotlib
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# %pylab inline
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#ref_file="data/lc/1367A.lc"
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#echo_file="data/lc/2246A.lc"
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ref_file = str(sys.argv[1])
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echo_file = str(sys.argv[2])
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dt = 0.01
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t1, l1, l1e = np.loadtxt(ref_file).T
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# errorbar(t1, l1, yerr=l1e, fmt='o')
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fqL = np.array([0.0049999999, 0.018619375, 0.044733049, 0.069336227, 0.10747115, 0.16658029,
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0.25819945, 0.40020915])
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#fqL = np.logspace(np.log10(0.005),np.log10(0.4),8)
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nfq = len(fqL) - 1
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fqd = 10**(np.log10( (fqL[:-1]*fqL[1:]) )/2.)
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P1 = clag.clag('psd10r', [t1], [l1], [l1e], dt, fqL)
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p1 = np.ones(nfq)
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p1, p1e = clag.optimize(P1, p1)
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p1, p1e = clag.errors(P1, p1, p1e)
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# xscale('log'); ylim(-4,2)
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# errorbar(fqd, p1, yerr=p1e, fmt='o', ms=10, color="black")
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ref_psd = p1
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ref_psd_err = p1e
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t2, l2, l2e = np.loadtxt(echo_file).T
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# errorbar(t1, l1, yerr=l1e, fmt='o', color="green")
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# errorbar(t2, l2, yerr=l2e, fmt='o', color="black")
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P2 = clag.clag('psd10r', [t2], [l2], [l2e], dt, fqL)
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p2 = np.ones(nfq)
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p2, p2e = clag.optimize(P2, p2)
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p2, p2e = clag.errors(P2, p2, p2e)
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# xscale('log'); ylim(-6,2)
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# errorbar(fqd, p1, yerr=p1e, fmt='o', ms=10, color="green")
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# errorbar(fqd, p2, yerr=p2e, fmt='o', ms=10, color="black")
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echo_psd = p2
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echo_psd_err = p2e
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Cx = clag.clag('cxd10r', [[t1,t2]], [[l1,l2]], [[l1e,l2e]], dt, fqL, p1, p2)
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p = np.concatenate( ((p1+p2)*0.5-0.3,p1*0+0.1) ) # a good starting point generally
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p, pe = clag.optimize(Cx, p)
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phi, phie = p[nfq:], pe[nfq:]
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lag, lage = phi/(2*np.pi*fqd), phie/(2*np.pi*fqd)
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cx, cxe = p[:nfq], pe[:nfq]
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cross_spectrm = cx
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cross_spectrm_err = cxe
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# xscale('log'); ylim(-2,1)
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# errorbar(fqd, lag, yerr=lage, fmt='o', ms=10,color="black")
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s, loc, scale = lognorm.fit(lag,loc=.01)
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# xscale('log'); ylim(-4,1.5)
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# errorbar(fqd, lag, yerr=lage, fmt='o', ms=10,color="black")
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##plot(fqd,norm.pdf(fqd,mu,sigma))
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#plot(fqd,lognorm.pdf(fqd,s,loc,scale))
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# mu,sigma
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#plot(ifft(lag))
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np.savetxt("freq.out",fqL.reshape((-1,len(fqL))))
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np.savetxt("ref_psd.out",[ref_psd,ref_psd_err])
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np.savetxt("echo_psd.out",[echo_psd,echo_psd_err])
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np.savetxt("crsspctrm.out",[cross_spectrm,cross_spectrm_err])
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np.savetxt("lag.out",[lag,lage])
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102
scripts/psdlag_8bin.py
Executable file
102
scripts/psdlag_8bin.py
Executable file
@ -0,0 +1,102 @@
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#!/usr/bin/env python
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import numpy as np
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from scipy.stats import norm
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from scipy.stats import lognorm
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import sys
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import getopt
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sys.path.insert(1,"/usr/local/science/clag-agn/data/")
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import clag
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import matplotlib
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# %pylab inline
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#ref_file="data/lc/1367A.lc"
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#echo_file="data/lc/2246A.lc"
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ref_file = str(sys.argv[1])
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echo_file = str(sys.argv[2])
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dt = 0.01
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t1, l1, l1e = np.loadtxt(ref_file).T
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# errorbar(t1, l1, yerr=l1e, fmt='o')
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fqL = np.array([0.0049999999, 0.018619375, 0.044733049, 0.069336227, 0.10747115, 0.16658029,
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0.25819945, 0.40020915, 0.62032418])
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#fqL = np.logspace(np.log10(0.005),np.log10(0.6),9)
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nfq = len(fqL) - 1
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fqd = 10**(np.log10( (fqL[:-1]*fqL[1:]) )/2.)
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P1 = clag.clag('psd10r', [t1], [l1], [l1e], dt, fqL)
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p1 = np.ones(nfq)
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p1, p1e = clag.optimize(P1, p1)
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p1, p1e = clag.errors(P1, p1, p1e)
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# xscale('log'); ylim(-4,2)
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# errorbar(fqd, p1, yerr=p1e, fmt='o', ms=10, color="black")
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ref_psd = p1
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ref_psd_err = p1e
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t2, l2, l2e = np.loadtxt(echo_file).T
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# errorbar(t1, l1, yerr=l1e, fmt='o', color="green")
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# errorbar(t2, l2, yerr=l2e, fmt='o', color="black")
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P2 = clag.clag('psd10r', [t2], [l2], [l2e], dt, fqL)
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p2 = np.ones(nfq)
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p2, p2e = clag.optimize(P2, p2)
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p2, p2e = clag.errors(P2, p2, p2e)
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# xscale('log'); ylim(-6,2)
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# errorbar(fqd, p1, yerr=p1e, fmt='o', ms=10, color="green")
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# errorbar(fqd, p2, yerr=p2e, fmt='o', ms=10, color="black")
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echo_psd = p2
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echo_psd_err = p2e
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Cx = clag.clag('cxd10r', [[t1,t2]], [[l1,l2]], [[l1e,l2e]], dt, fqL, p1, p2)
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p = np.concatenate( ((p1+p2)*0.5-0.3,p1*0+0.1) ) # a good starting point generally
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p, pe = clag.optimize(Cx, p)
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phi, phie = p[nfq:], pe[nfq:]
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lag, lage = phi/(2*np.pi*fqd), phie/(2*np.pi*fqd)
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cx, cxe = p[:nfq], pe[:nfq]
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cross_spectrm = cx
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cross_spectrm_err = cxe
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# xscale('log'); ylim(-2,1)
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# errorbar(fqd, lag, yerr=lage, fmt='o', ms=10,color="black")
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s, loc, scale = lognorm.fit(lag,loc=.01)
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# xscale('log'); ylim(-4,1.5)
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# errorbar(fqd, lag, yerr=lage, fmt='o', ms=10,color="black")
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##plot(fqd,norm.pdf(fqd,mu,sigma))
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#plot(fqd,lognorm.pdf(fqd,s,loc,scale))
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# mu,sigma
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#plot(ifft(lag))
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np.savetxt("freq.out",fqL.reshape((-1,len(fqL))))
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np.savetxt("ref_psd.out",[ref_psd,ref_psd_err])
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np.savetxt("echo_psd.out",[echo_psd,echo_psd_err])
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np.savetxt("crsspctrm.out",[cross_spectrm,cross_spectrm_err])
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np.savetxt("lag.out",[lag,lage])
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159
scripts/templates/lag_overlay_atlas.gp
Normal file
159
scripts/templates/lag_overlay_atlas.gp
Normal file
@ -0,0 +1,159 @@
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set terminal pdf size 3.5,5
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set output "lag_atlas.pdf"
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set termopt enhanced
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set macros
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# Placement of the a,b,c,d labels in the graphs
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POS = "at graph 0.61,0.85 font 'Times,12'"
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# x- and ytics for each row resp. column
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NOXNUMS = "unset xlabel;\
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set format x ''"
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XNUMS = "unset xlabel;\
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set format x '10^{%+3T}'"
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XLABEL = "set xlabel 'Temporal Frequency [days^{-1}]' font 'Times' off 0,1;\
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set format x '10^{%+3T}'"
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YLABEL = "set ylabel 'Lag [days]' font 'Times' offset 1,2.5;\
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set format y '%.0t'"
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NOYNUMS = "set format y ''; unset ylabel"
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YNUMS = "set format y '%.0t'"
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VSET_1 = "set tmargin at screen 0.97; set bmargin at screen 0.825"
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VSET_2 = "set tmargin at screen 0.825; set bmargin at screen 0.68"
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VSET_3 = "set tmargin at screen 0.68; set bmargin at screen 0.535"
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VSET_4 = "set tmargin at screen 0.535; set bmargin at screen 0.39"
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VSET_5 = "set tmargin at screen 0.39; set bmargin at screen 0.245"
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VSET_6 = "set tmargin at screen 0.245; set bmargin at screen 0.10"
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HSET_1 = "set lmargin at screen 0.15; set rmargin at screen 0.42"
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HSET_2 = "set lmargin at screen 0.42; set rmargin at screen 0.69"
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HSET_3 = "set lmargin at screen 0.69; set rmargin at screen 0.96"
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unset key
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set logscale x
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set xtics auto font 'Times,9' offset 0,.5
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set ytics (-1,0,1,2,3,4,5) font 'Times,9'
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set ytics add ('' -1.5 1,'' -0.5 1,'' 0.5 1,'' 1.5 1,'' 2.5 1,'' 3.5 1,'' 4.5 1,'' 5.5 1)
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set xrange [0.005:0.620];
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set yrange [-2:6]
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# Draw line at origin
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set arrow from 0.005,0 to 0.620,0 nohead lt 3 lc rgb 'black'
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set pointsize 0
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set multiplot layout 6,3 rowsfirst
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# --- GRAPH a
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@VSET_1; @HSET_1
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@NOXNUMS; @YNUMS
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH b
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_1; @HSET_2
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
#-- GRAPH c
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_1; @HSET_3
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH d
|
||||
@NOXNUMS; @YNUMS
|
||||
@VSET_2; @HSET_1
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_2; @HSET_2
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_2; @HSET_3
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @YNUMS
|
||||
@VSET_3; @HSET_1
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_3; @HSET_2
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_3; @HSET_3
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @YLABEL
|
||||
@VSET_4; @HSET_1
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_4; @HSET_2
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_4; @HSET_3
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @YNUMS
|
||||
@VSET_5; @HSET_1
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_5; @HSET_2
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_5; @HSET_3
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@XNUMS; @YNUMS
|
||||
@VSET_6; @HSET_1
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@XLABEL; @NOYNUMS
|
||||
@VSET_6; @HSET_2
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@XNUMS; @NOYNUMS
|
||||
@VSET_6; @HSET_3
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
|
||||
unset multiplot
|
||||
|
||||
Loading…
Reference in New Issue
Block a user