From 834e5f0192c525a70bcdb733812e7e51cc5caf09 Mon Sep 17 00:00:00 2001
From: caes <caes>
Date: Tue, 27 Jun 2017 04:21:34 -0400
Subject: [PATCH] upload to JR

---
 scripts/psdlag_4bin.py            | 6 ++++--
 scripts/templates/thor_submit.pbs | 9 +++++++++
 2 files changed, 13 insertions(+), 2 deletions(-)
 create mode 100644 scripts/templates/thor_submit.pbs

diff --git a/scripts/psdlag_4bin.py b/scripts/psdlag_4bin.py
index 21e3267..68304ad 100755
--- a/scripts/psdlag_4bin.py
+++ b/scripts/psdlag_4bin.py
@@ -34,7 +34,10 @@ t1, l1, l1e = np.loadtxt(ref_file).T
 #               0.22, 0.56])
 
 #D
-fqL = [0.0049999999] + np.logspace(np.log10(0.02999999),np.log10(0.340002000),5)
+fqL = [0.0049999999] + np.logspace(np.log10(0.05999999),np.log10(0.340002000),5)
+fqL = np.array([0.0049999999, 0.044733049,
+                0.10747115,
+                0.25819945, 0.44020915])
 nfq = len(fqL) - 1
 fqd = 10**(np.log10( (fqL[:-1]*fqL[1:]) )/2.)
 
@@ -45,7 +48,6 @@ fqd = 10**(np.log10( (fqL[:-1]*fqL[1:]) )/2.)
 P1 = clag.clag('psd10r', [t1], [l1], [l1e], dt, fqL)
 p1 = np.ones(nfq)
 p1, p1e = clag.optimize(P1, p1)
-
 p1, p1e = clag.errors(P1, p1, p1e)
 
 
diff --git a/scripts/templates/thor_submit.pbs b/scripts/templates/thor_submit.pbs
new file mode 100644
index 0000000..1878de9
--- /dev/null
+++ b/scripts/templates/thor_submit.pbs
@@ -0,0 +1,9 @@
+#!/bin/sh -login
+#PBS -l mem=64GB
+#PBS -l nodes=1:ppn=1:research
+#PBS -l walltime=48:00:00
+#PBS -N "%NAME%"
+#PBS -j oe
+
+cd %ROOTDIR%
+time ~/psdlag-agn/bin/psdlag '%ROOTDIR%/%ARGSFILE%' > '%ROOTDIR%/%OUTPUTFILE%'