mirror of
https://asciireactor.com/otho/clag-agn.git
synced 2024-11-21 23:05:07 +00:00
added gnuplot templates
This commit is contained in:
caes
parent
539cb359ed
commit
3130b78f58
@ -1,6 +1,9 @@
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#!/usr/bin/env bash
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mkdir -p data
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mkdir -p data/tables
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mkdir -p logs
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analysis_script="psdlag_4bin.py"
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ref_band="1367A"
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refpsd_tabfile=data/tables/psd_${ref_band}.tab
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@ -20,16 +23,23 @@ do
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echo -n "Running psdlag using ref band ${ref_band}"
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echo " and echo band $echo_band."
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# psdlag python script will call clag and print rudimentary tables to *.out
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time scripts/psdlag_4bin.py data/lc/${ref_band}.lc $lightcurve > /dev/null
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echo $(date) >> logs/$echo_band
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echo " " >> logs/$echo_band
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# psdlag python script will call clag and print rudimentary tables to *.out,
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# and is logged to the log file
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time scripts/${analysis_script} data/lc/${ref_band}.lc $lightcurve >> logs/${echo_band}
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# process_tables perl script reads *.out files from the python script,
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# then creates other useful tables
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scripts/process_tables.pl $echo_band > /dev/null
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scripts/process_tables.pl $echo_band
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# saves the tables to data/tables/
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mv -v tmp.echopsd $echopsd_tabfile
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mv -v tmp.refpsd $refpsd_tabfile
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mv -v tmp.lag $timelag_tabfile
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echo ""
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done
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@ -8,13 +8,12 @@ ref_band="1367A"
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case $1 in
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"PSD"|"psd"|"PSDs"|"PSDS"|"psds")
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gnuplot_file=psd_atlas.gp
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scripts/propagate_tables.sh
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gnuplot_input=$(cat scripts/templates/${gnuplot_file}|
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perl -pe 's|\n||g')
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for tabfile in data/tables/psd_*.tab;
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do
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echo_band=$(basename $tabfile|
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sed 's|psd_\([0-9]????A\).tab|\1|')
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sed 's|psd_\([0-9]\{4\}A\).tab|\1|')
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if [[ "$echo_band" == "$ref_band" ]] ; then continue; fi
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gnuplot_input_edit=$(echo "$gnuplot_input"|
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sed "s|%FILE%|$tabfile|"|
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@ -158,15 +158,16 @@ while( each %function_bin) {
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}
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close($datafile);
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open($datafile,'>',"tmp.crsspctrm") or die $!;
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while( each %function_bin) {
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say $datafile
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$_ . " " .
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$function_bin{$_}{"crsspctrm_PSD_μ"} . " " .
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$function_bin{$_}{"Δ"} . " " .
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$function_bin{$_}{"crsspctrm_PSD_σ"};
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}
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close($datafile);
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# cross spectrum not needed
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# open($datafile,'>',"tmp.crsspctrm") or die $!;
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# while( each %function_bin) {
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# say $datafile
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# $_ . " " .
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# $function_bin{$_}{"crsspctrm_PSD_μ"} . " " .
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# $function_bin{$_}{"Δ"} . " " .
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# $function_bin{$_}{"crsspctrm_PSD_σ"};
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# }
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# close($datafile);
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open($datafile,'>',"tmp.lag") or die $!;
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while( each %function_bin) {
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34
scripts/templates/psd.gp
Normal file
34
scripts/templates/psd.gp
Normal file
@ -0,0 +1,34 @@
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# This method assumes y values are in logarithm units already.
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set terminal pdf
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set output "%OUTPUTFILE%"
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set termopt enhanced
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set macros
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# Placement of the a,b,c,d labels in the graphs
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POS = "at graph 0.8,0.84 font 'Times,24'"
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XLABEL = "set xlabel 'Temporal Frequency [days^{-1}]' font 'Times' off 0,1;\
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set format x '10^{%+3T}'"
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YLABEL = "set ylabel 'log_{10} PSD' font 'Times' offset 1,2.5;\
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set format y '%.0t'"
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unset title
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unset key
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set xlabel "Temporal Frequency [days^{-1}]" font "Times,24"
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set xrange [0.005:0.620]
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set xtics auto font 'Times,16'
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set logscale x
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set ylabel "log_{10} PSD" font "Times,24"
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set yrange [-5.5:0.5]
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set ytics auto font 'Times,16'
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set ytics add ('' -0.5 1,'' -1.5 1,'' -2.5 1,'' -3.5 1,'' -4.5 1)
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set xzeroaxis
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set label 1 '%LABEL1%' @POS
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plot '%FILE1%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .5 lt rgb "black", \
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'%FILE2%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .5 lt rgb "red"
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160
scripts/templates/psd_atlas.gp
Normal file
160
scripts/templates/psd_atlas.gp
Normal file
@ -0,0 +1,160 @@
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set terminal pdf size 3.5,5
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set output "psd_atlas.pdf"
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set termopt enhanced
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set macros
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# Placement of the a,b,c,d labels in the graphs
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POS = "at graph 0.61,0.85 font 'Times,12'"
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# x- and ytics for each row resp. column
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NOXNUMS = "unset xlabel;\
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set format x ''"
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XNUMS = "unset xlabel;\
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set format x '10^{%+3T}'"
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XLABEL = "set xlabel 'Temporal Frequency [days^{-1}]' font 'Times' off 0,1;\
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set format x '10^{%+3T}'"
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YLABEL = "set ylabel 'log_{10} PSD' font 'Times' offset 1,2.5;\
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set format y '%.0t'"
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NOYNUMS = "set format y ''; unset ylabel"
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YNUMS = "set format y '%.0t'"
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VSET_1 = "set tmargin at screen 0.97; set bmargin at screen 0.825"
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VSET_2 = "set tmargin at screen 0.825; set bmargin at screen 0.68"
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VSET_3 = "set tmargin at screen 0.68; set bmargin at screen 0.535"
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VSET_4 = "set tmargin at screen 0.535; set bmargin at screen 0.39"
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VSET_5 = "set tmargin at screen 0.39; set bmargin at screen 0.245"
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VSET_6 = "set tmargin at screen 0.245; set bmargin at screen 0.10"
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HSET_1 = "set lmargin at screen 0.15; set rmargin at screen 0.42"
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HSET_2 = "set lmargin at screen 0.42; set rmargin at screen 0.69"
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HSET_3 = "set lmargin at screen 0.69; set rmargin at screen 0.96"
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unset key
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set logscale x
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set xtics auto font 'Times,9' offset 0,.5
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set ytics auto font 'Times,9'
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set ytics add ('' -0.5 1,'' -1.5 1,'' -2.5 1,'' -3.5 1,'' -4.5 1)
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# xrange from 2016 REU freq bins
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#set xrange [0.005:0.620];
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set yrange [-5.5:0.5]
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# xrange pulled from example.py from first version of clag
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set xrange [0.001:5]
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set yrange [-5.5:0.5]
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set multiplot layout 6,3 rowsfirst
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# --- GRAPH a
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@VSET_1; @HSET_1
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@NOXNUMS; @YNUMS
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH b
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@NOXNUMS; @NOYNUMS
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@VSET_1; @HSET_2
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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#-- GRAPH c
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@NOXNUMS; @NOYNUMS
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@VSET_1; @HSET_3
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH d
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@NOXNUMS; @YNUMS
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@VSET_2; @HSET_1
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @NOYNUMS
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@VSET_2; @HSET_2
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @NOYNUMS
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@VSET_2; @HSET_3
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @YNUMS
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@VSET_3; @HSET_1
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @NOYNUMS
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@VSET_3; @HSET_2
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @NOYNUMS
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@VSET_3; @HSET_3
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @YLABEL
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@VSET_4; @HSET_1
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @NOYNUMS
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@VSET_4; @HSET_2
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @NOYNUMS
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@VSET_4; @HSET_3
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @YNUMS
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@VSET_5; @HSET_1
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @NOYNUMS
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@VSET_5; @HSET_2
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @NOYNUMS
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@VSET_5; @HSET_3
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@XNUMS; @YNUMS
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@VSET_6; @HSET_1
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@XLABEL; @NOYNUMS
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@VSET_6; @HSET_2
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@XNUMS; @NOYNUMS
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@VSET_6; @HSET_3
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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unset multiplot
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36
scripts/templates/timelag.gp
Normal file
36
scripts/templates/timelag.gp
Normal file
@ -0,0 +1,36 @@
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set terminal pdf
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set output "%OUTPUTFILE%"
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set termopt enhanced
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set macros
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# Placement of the a,b,c,d labels in the graphs
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POS = "at graph 0.8,0.92 font 'Times,24'"
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XLABEL = "set xlabel 'Temporal Frequency [days^{-1}]' font 'Times' off 0,1;\
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set format x '10^{%+3T}'"
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YLABEL = "set ylabel 'log_{10} PSD' font 'Times' offset 1,2.5;\
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set format y '%.0t'"
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unset title
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unset key
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set xlabel "Temporal Frequency [days^{-1}]" font "Times,24"
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set xrange [0.005:0.620]
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set xtics auto font 'Times,16'
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set logscale x
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set xzeroaxis
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set ylabel "Lag [days]" font "Times,24"
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set yrange [-2:6]
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#set ytics (-1,0,1,2,3,4,5) font 'Times,16'
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set ytics auto font 'Times,16'
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set ytics add ('' -1.5 1,'' -0.5 1,'' 0.5 1,'' 1.5 1,'' 2.5 1,'' 3.5 1,'' 4.5 1,'' 5.5 1)
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# Draw line at origin
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#set arrow from 0.005,0 to 0.620,0 nohead lt 3 lc rgb 'black'
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#set pointsize 0
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set label 1 '%LABEL1%' @POS
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plot '%FILE1%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .5 lt rgb "black"
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159
scripts/templates/timelag_atlas.gp
Normal file
159
scripts/templates/timelag_atlas.gp
Normal file
@ -0,0 +1,159 @@
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set terminal pdf size 3.5,5
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set output "timelag_atlas.pdf"
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set termopt enhanced
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set macros
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# Placement of the a,b,c,d labels in the graphs
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POS = "at graph 0.61,0.85 font 'Times,12'"
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# x- and ytics for each row resp. column
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NOXNUMS = "unset xlabel;\
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set format x ''"
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XNUMS = "unset xlabel;\
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set format x '10^{%+3T}'"
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XLABEL = "set xlabel 'Temporal Frequency [days^{-1}]' font 'Times' off 0,1;\
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set format x '10^{%+3T}'"
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YLABEL = "set ylabel 'Lag [days]' font 'Times' offset 1,2.5;\
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set format y '%.0t'"
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NOYNUMS = "set format y ''; unset ylabel"
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YNUMS = "set format y '%.0t'"
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VSET_1 = "set tmargin at screen 0.97; set bmargin at screen 0.825"
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VSET_2 = "set tmargin at screen 0.825; set bmargin at screen 0.68"
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VSET_3 = "set tmargin at screen 0.68; set bmargin at screen 0.535"
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VSET_4 = "set tmargin at screen 0.535; set bmargin at screen 0.39"
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VSET_5 = "set tmargin at screen 0.39; set bmargin at screen 0.245"
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VSET_6 = "set tmargin at screen 0.245; set bmargin at screen 0.10"
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HSET_1 = "set lmargin at screen 0.15; set rmargin at screen 0.42"
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HSET_2 = "set lmargin at screen 0.42; set rmargin at screen 0.69"
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HSET_3 = "set lmargin at screen 0.69; set rmargin at screen 0.96"
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unset key
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set logscale x
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set xtics auto font 'Times,9' offset 0,.5
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set ytics (-1,0,1,2,3,4,5) font 'Times,9'
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set ytics add ('' -1.5 1,'' -0.5 1,'' 0.5 1,'' 1.5 1,'' 2.5 1,'' 3.5 1,'' 4.5 1,'' 5.5 1)
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set xrange [0.005:0.620];
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set yrange [-2:6]
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# Draw line at origin
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set arrow from 0.005,0 to 0.620,0 nohead lt 3 lc rgb 'black'
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set pointsize 0
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set multiplot layout 6,3 rowsfirst
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# --- GRAPH a
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@VSET_1; @HSET_1
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@NOXNUMS; @YNUMS
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH b
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@NOXNUMS; @NOYNUMS
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@VSET_1; @HSET_2
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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#-- GRAPH c
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@NOXNUMS; @NOYNUMS
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@VSET_1; @HSET_3
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH d
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@NOXNUMS; @YNUMS
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@VSET_2; @HSET_1
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @NOYNUMS
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@VSET_2; @HSET_2
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @NOYNUMS
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@VSET_2; @HSET_3
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set label 1 '%LABEL%' @POS
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plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
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# --- GRAPH a
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@NOXNUMS; @YNUMS
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@VSET_3; @HSET_1
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set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_3; @HSET_2
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_3; @HSET_3
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @YLABEL
|
||||
@VSET_4; @HSET_1
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_4; @HSET_2
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_4; @HSET_3
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @YNUMS
|
||||
@VSET_5; @HSET_1
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_5; @HSET_2
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@NOXNUMS; @NOYNUMS
|
||||
@VSET_5; @HSET_3
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@XNUMS; @YNUMS
|
||||
@VSET_6; @HSET_1
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@XLABEL; @NOYNUMS
|
||||
@VSET_6; @HSET_2
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
# --- GRAPH a
|
||||
@XNUMS; @NOYNUMS
|
||||
@VSET_6; @HSET_3
|
||||
set label 1 '%LABEL%' @POS
|
||||
plot '%FILE%' using 1:2:($2-$4):($2+$4) with yerrorbars pt 7 ps .3 lt rgb "black"
|
||||
|
||||
|
||||
unset multiplot
|
||||
|
||||
21
scripts/templates/timelag_compare.gp
Normal file
21
scripts/templates/timelag_compare.gp
Normal file
@ -0,0 +1,21 @@
|
||||
set terminal pdf
|
||||
set termoption dash
|
||||
set termopt enhanced
|
||||
set output "%OUTPUTFILE%"
|
||||
|
||||
set title "%TITLE%\n{/*0.7 %SUBTITLE%}"
|
||||
set xlabel "Temporal Frequency [days^{-1}]"
|
||||
set xrange [0.005:0.620]
|
||||
set logscale x
|
||||
|
||||
set ylabel "Lag [days]"
|
||||
#set yrange [%YMIN:%YMAX]
|
||||
#set yrange [-5:7]
|
||||
set key outside
|
||||
set key center bottom
|
||||
|
||||
# Draw line at origin
|
||||
set arrow from 0.005,0 to 0.620,0 nohead lt 3 lc rgb 'black'
|
||||
set pointsize 0
|
||||
plot '%FILE1%' using 1:2:3:4 with xyerrorbars title "%LABEL1%", \
|
||||
"%FILE2%" using 1:2:3:4 with xyerrorbars title "%LABEL2%"
|
||||
22
scripts/templates/tophat_freqdomain.gp
Normal file
22
scripts/templates/tophat_freqdomain.gp
Normal file
@ -0,0 +1,22 @@
|
||||
set terminal pdf
|
||||
set termopt enhanced
|
||||
set output "tophat_freqdomain.pdf"
|
||||
|
||||
set xrange [0.005:0.620]
|
||||
set logscale x
|
||||
set xlabel "Temporal Frequency [days^{-1}]" font "Times,24"
|
||||
set xtics font 'Times,16'
|
||||
set mxtics
|
||||
|
||||
set yrange [-30:30]
|
||||
set ylabel "Time Delay [days]" font "Times,24"
|
||||
set ytics font 'Times,16'
|
||||
set mytics
|
||||
|
||||
|
||||
unset key
|
||||
|
||||
|
||||
plot "analyses/tables/tophat_fft1.tab" using 1:2 with lines lc rgb "red", \
|
||||
"analyses/tables/tophat_fft2.tab" using 1:2 with lines lc rgb "green", \
|
||||
"analyses/tables/tophat_fft3.tab" using 1:2 with lines lc rgb "blue"
|
||||
19
scripts/templates/tophat_timedomain.gp
Normal file
19
scripts/templates/tophat_timedomain.gp
Normal file
@ -0,0 +1,19 @@
|
||||
set terminal pdf
|
||||
set output "tophat_timedomain.pdf"
|
||||
|
||||
set xrange [0:35]
|
||||
set xlabel "Time [days]" font "Times,24"
|
||||
set xtics font 'Times,16'
|
||||
set mxtics
|
||||
|
||||
set yrange [0:0.5]
|
||||
set ylabel "Response [n.u.]" font "Times,24"
|
||||
set ytics font 'Times,16'
|
||||
set mytics
|
||||
|
||||
unset key
|
||||
|
||||
|
||||
plot "analyses/tables/tophat1.tab" using 1:2 with lines lc rgb "red", \
|
||||
"analyses/tables/tophat2.tab" using 1:2 with lines lc rgb "green", \
|
||||
"analyses/tables/tophat3.tab" using 1:2 with lines lc rgb "blue"
|
||||
Loading…
Reference in New Issue
Block a user