#!/usr/bin/env bash

# This still isn't really generalized. Need to go to a
# specific directory of runs to run this. Feed it a list
# of column densities.

script_dir=$(
    cd $(dirname $0) ;
    pwd -P |sed 's@^\(.*\)/scripts.*@\1/scripts@'
    )
base_dir=`pwd`
bin_dir="$script_dir/../bin"

griddir=$1
grid_id=$(echo ${griddir}|sed 's@^\.\/\(.*\)@\1@'|sed 's@.grids@@'|sed 's@\/@.@g')

if [[ -e "fortfiles_${grid_id}.tar.gz" ]]; then
    echo "Package fortfiles_${grid_id}.tar.gz exists."
    exit 5
else
    echo "Setting up to compile fortfiles_${grid_id}.tar.gz."
fi

cd $griddir

if [[ -e "mpi_grid.out" ]]; then 
    echo -n ""
else
    echo "mpi_grid.out doesn't exist"
    cd $base_dir
    exit 6
fi

mkdir -p fortfiles
cd fortfiles
# pwd

cp ../mpi_grid.in .
cp ../*.tab .

echo "Directory ready. Calling fort file creation."
$bin_dir/create_fort_files ../mpi_grid.out $script_dir/../reference/linelist.c17

echo "Applying interpolative smoothing."
$script_dir/operations/bulk_interpolation_fix.sh fort.* > interpolation_report


grid_id=$(echo ${griddir}|sed 's@^\.\/\(.*\)@\1@'|sed 's@.grids@@'|sed 's@\/@.@g')
echo "Saving $grid_id grid"
tar cf fortfiles_${grid_id}.tar *
gzip fortfiles_${grid_id}.tar
mv fortfiles_${grid_id}.tar.gz $base_dir

cd $base_dir